Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QMF28_RS09110 Genome accession   NZ_AP026973
Coordinates   1821006..1821461 (-) Length   151 a.a.
NCBI ID   WP_068319607.1    Uniprot ID   -
Organism   Polynucleobacter yangtzensis strain KF023     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1816006..1826461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMF28_RS09095 (PKF023_17540) ilvA 1817664..1819184 (+) 1521 WP_281742411.1 threonine ammonia-lyase, biosynthetic -
  QMF28_RS09100 (PKF023_17550) - 1819184..1820092 (+) 909 WP_068319603.1 5'-nucleotidase -
  QMF28_RS09105 (PKF023_17560) queF 1820101..1820928 (+) 828 WP_281742412.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF -
  QMF28_RS09110 (PKF023_17570) ssb 1821006..1821461 (-) 456 WP_068319607.1 single-stranded DNA-binding protein Machinery gene
  QMF28_RS09115 (PKF023_17580) - 1821543..1822727 (-) 1185 WP_281742413.1 MFS transporter -
  QMF28_RS09120 (PKF023_17590) uvrA 1822765..1825662 (+) 2898 WP_281742414.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 16260.13 Da        Isoelectric Point: 5.9393

>NTDB_id=99173 QMF28_RS09110 WP_068319607.1 1821006..1821461(-) (ssb) [Polynucleobacter yangtzensis strain KF023]
MASVNKVIIVGNVGRDPETRYMPSGDAVTNISVATSDRYKDKQTGEMKETTEWHRVAFFGKLAEIAGQYLKKGSQVYVEG
RLRTRKWTDASGQEKYSTEIVAETMQMLGGKPVGGSGDGGESYSRSKPAEQSAPAASNAASLGAMDDDIPF

Nucleotide


Download         Length: 456 bp        

>NTDB_id=99173 QMF28_RS09110 WP_068319607.1 1821006..1821461(-) (ssb) [Polynucleobacter yangtzensis strain KF023]
ATGGCTTCGGTAAATAAGGTCATCATCGTAGGTAACGTAGGGCGCGATCCAGAAACTCGTTACATGCCAAGCGGCGACGC
CGTTACAAACATTTCAGTAGCAACATCTGATCGCTACAAAGACAAACAAACTGGCGAAATGAAAGAAACCACAGAATGGC
ACCGTGTTGCATTCTTCGGTAAGCTTGCAGAAATCGCTGGTCAGTACCTCAAAAAAGGTTCACAGGTTTATGTTGAAGGT
CGTCTGCGTACTCGCAAATGGACTGACGCTAGCGGCCAAGAAAAGTATTCCACAGAGATCGTTGCAGAAACTATGCAAAT
GCTCGGTGGCAAGCCAGTTGGTGGCAGTGGTGATGGCGGCGAAAGCTACAGCCGCTCAAAGCCGGCTGAGCAGTCTGCTC
CAGCAGCCTCCAACGCTGCATCACTAGGTGCAATGGACGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.412

100

0.603
  ssb Glaesserella parasuis strain SC1401

46.111

100

0.55
  ssb Neisseria meningitidis MC58

46.591

100

0.543
  ssb Neisseria gonorrhoeae MS11

46.591

100

0.543

Multiple sequence alignment