Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PKF022_RS08800 Genome accession   NZ_AP026972
Coordinates   1713526..1713981 (-) Length   151 a.a.
NCBI ID   WP_281776644.1    Uniprot ID   -
Organism   Polynucleobacter sp. KF022     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1708526..1718981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PKF022_RS08785 (PKF022_17000) ilvA 1710149..1711669 (+) 1521 WP_281776641.1 threonine ammonia-lyase, biosynthetic -
  PKF022_RS08790 (PKF022_17010) - 1711680..1712588 (+) 909 WP_281776642.1 5'-nucleotidase -
  PKF022_RS08795 (PKF022_17020) queF 1712597..1713424 (+) 828 WP_281776643.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF -
  PKF022_RS08800 (PKF022_17030) ssb 1713526..1713981 (-) 456 WP_281776644.1 single-stranded DNA-binding protein Machinery gene
  PKF022_RS08805 (PKF022_17040) - 1714062..1715246 (-) 1185 WP_281776645.1 MFS transporter -
  PKF022_RS08810 (PKF022_17050) uvrA 1715284..1718175 (+) 2892 WP_281776646.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 16290.16 Da        Isoelectric Point: 5.9393

>NTDB_id=99163 PKF022_RS08800 WP_281776644.1 1713526..1713981(-) (ssb) [Polynucleobacter sp. KF022]
MASVNKVIIVGNVGRDPETRYMPSGDAVTNISVATSDRYKDKQTGEMKETTEWHRVAFFGKLAEIAGQYLKKGSQVYVEG
RLRTRKWTDASGQEKYSTEIVAETMQMLGGKPVGGSGDGGESYSRSKPAEQSTPAASNAASLGAMDDDIPF

Nucleotide


Download         Length: 456 bp        

>NTDB_id=99163 PKF022_RS08800 WP_281776644.1 1713526..1713981(-) (ssb) [Polynucleobacter sp. KF022]
ATGGCTTCGGTAAATAAAGTCATCATCGTAGGTAACGTAGGACGCGATCCAGAAACTCGTTACATGCCAAGCGGCGACGC
CGTTACAAATATTTCAGTAGCTACATCTGATCGCTACAAAGACAAGCAAACTGGCGAAATGAAAGAAACCACAGAATGGC
ACCGCGTTGCATTCTTTGGCAAGCTTGCAGAAATCGCTGGGCAGTACCTCAAAAAAGGTTCACAGGTTTATGTTGAAGGT
CGTTTGCGTACTCGTAAATGGACTGACGCTAGTGGTCAAGAAAAGTATTCCACTGAGATCGTTGCAGAAACAATGCAAAT
GCTCGGTGGTAAGCCAGTTGGTGGCAGTGGTGATGGTGGCGAAAGCTACAGCCGCTCAAAGCCGGCTGAGCAGTCTACTC
CAGCAGCCTCAAATGCTGCATCACTAGGTGCAATGGACGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.847

100

0.596
  ssb Glaesserella parasuis strain SC1401

46.111

100

0.55
  ssb Neisseria gonorrhoeae MS11

46.023

100

0.536
  ssb Neisseria meningitidis MC58

45.455

100

0.53

Multiple sequence alignment