NTDB

Overview

Name	ysxA/radC	Type	Machinery gene
Locus tag	SRS_RS08805	Genome accession	NZ_LN626917
Coordinates	1741509..1742195 (-)	Length	228 a.a.
NCBI ID	WP_000692886.1	Uniprot ID	-
Organism	Staphylococcus aureus strain ILRI_Eymole1/1 isolate Staphylococcus aureus isolate ILRI_Eymole1/1
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1736509..1747195

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SRS_RS08765	rpmA	1737222..1737506 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
SRS_RS08770	-	1737518..1737838 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
SRS_RS08775	rplU	1737844..1738153 (-)	310	Protein_1721	50S ribosomal protein L21	-
SRS_RS08780	mreD	1738446..1738976 (-)	531	WP_001259929.1	rod shape-determining protein MreD	-
SRS_RS08785	mreC	1738976..1739818 (-)	843	WP_000911041.1	rod shape-determining protein MreC	-
SRS_RS08790	-	1740018..1740137 (-)	120	WP_000840603.1	hypothetical protein	-
SRS_RS08795	-	1740211..1740684 (-)	474	WP_045179229.1	DUF4930 family protein	-
SRS_RS15190	-	1740844..1741041 (+)	198	WP_000025835.1	hypothetical protein	-
SRS_RS08800	-	1741157..1741441 (-)	285	WP_000171861.1	hypothetical protein	-
SRS_RS08805	ysxA/radC	1741509..1742195 (-)	687	WP_000692886.1	RadC family protein	Machinery gene
SRS_RS08810	-	1742192..1742899 (-)	708	WP_045179232.1	prepilin peptidase	-
SRS_RS08820	-	1743160..1744431 (-)	1272	WP_001108339.1	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	-
SRS_RS08825	-	1744444..1747074 (-)	2631	WP_000425358.1	valine--tRNA ligase	-

Sequence

Protein

Download Length: 228 a.a. Molecular weight: 25311.24 Da Isoelectric Point: 6.7572

                                >NTDB_id=990983 SRS_RS08805 WP_000692886.1 1741509..1742195(-) (ysxA/radC) [Staphylococcus aureus strain ILRI_Eymole1/1 isolate Staphylococcus aureus isolate ILRI_Eymole1/1]

MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI

TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSI

AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

Download Length: 687 bp

                                >NTDB_id=990983 SRS_RS08805 WP_000692886.1 1741509..1742195(-) (ysxA/radC) [Staphylococcus aureus strain ILRI_Eymole1/1 isolate Staphylococcus aureus isolate ILRI_Eymole1/1]

TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC

AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGTATTGACATTAGTAATGAACTGCTTAAATCTG

CATCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT

ACATTAAAAGCGGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG

TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA

ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATT

GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT

AATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGAATAGATTTATTGGATCATATTATAATCGGTGATAATA

GATTTACCAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-222)

UPF0758 N-terminal (UPF0758_N)

(3-80)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.679	98.246	0.518
radC	Streptococcus pneumoniae TIGR4	41.038	92.982	0.382
radC	Streptococcus gordonii str. Challis substr. CH1	39.908	95.614	0.382
radC	Streptococcus pneumoniae R6	40.566	92.982	0.377
radC	Streptococcus pneumoniae D39	40.566	92.982	0.377

Detailed information NTG0990983