Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   HMPREF9318_RS07940 Genome accession   NZ_KB373319
Coordinates   32353..33351 (+) Length   332 a.a.
NCBI ID   WP_006740129.1    Uniprot ID   G5KFI3
Organism   Streptococcus urinalis FB127-CNA-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 27353..38351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF9318_RS07915 (HMPREF9318_01592) purE 27386..27874 (+) 489 WP_006738645.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  HMPREF9318_RS07920 (HMPREF9318_01593) purK 27861..28934 (+) 1074 WP_006740048.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  HMPREF9318_RS07925 (HMPREF9318_01594) - 28955..29560 (+) 606 WP_006739379.1 hypothetical protein -
  HMPREF9318_RS07930 (HMPREF9318_01595) purB 29769..31064 (+) 1296 WP_006740705.1 adenylosuccinate lyase -
  HMPREF9318_RS07935 (HMPREF9318_01596) - 31181..32110 (+) 930 Protein_28 helix-turn-helix domain-containing protein -
  HMPREF9318_RS12035 (HMPREF9318_01597) - 32225..32323 (+) 99 WP_006740706.1 quorum-sensing system DWW-type pheromone -
  HMPREF9318_RS07940 (HMPREF9318_01598) ruvB 32353..33351 (+) 999 WP_006740129.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  HMPREF9318_RS07945 (HMPREF9318_01599) - 33609..34058 (+) 450 WP_006738715.1 low molecular weight protein-tyrosine-phosphatase -
  HMPREF9318_RS07950 (HMPREF9318_01600) - 34076..34456 (+) 381 WP_196792584.1 hypothetical protein -
  HMPREF9318_RS07955 (HMPREF9318_01601) - 34453..36231 (+) 1779 WP_006739776.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 37229.65 Da        Isoelectric Point: 4.5402

>NTDB_id=990731 HMPREF9318_RS07940 WP_006740129.1 32353..33351(+) (ruvB) [Streptococcus urinalis FB127-CNA-2]
MTRILDNDILGDEEYSERSLRPQYFKEYIGQSKVKDQLTIFIEAAKMRDESLDHVLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPAIEKAGDLVAILNDLEPGDVLFIDEIHRMPMAVEEVLYSAMEDFYIDIMIGASDTSRSVHLDLPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYELDDLTEIVERTADIFDMAIVKEAAIELAKRSRGTPRIANRLLKRVRDFAQIKGDGTIT
SQITDQALSMLDVDQEGLDYVDQKILRTMIEMYNGGPVGLGTLSINIAEERDTVEDMYEPYLIQKGFMMRTRTGRVATAK
AYQHLGYPLSEK

Nucleotide


Download         Length: 999 bp        

>NTDB_id=990731 HMPREF9318_RS07940 WP_006740129.1 32353..33351(+) (ruvB) [Streptococcus urinalis FB127-CNA-2]
ATGACAAGAATCTTAGATAATGATATATTAGGGGATGAGGAGTATTCTGAGCGTTCACTACGTCCTCAATATTTTAAAGA
ATATATTGGTCAATCAAAAGTAAAAGATCAATTAACAATTTTTATTGAAGCTGCAAAAATGAGAGATGAATCGTTGGATC
ATGTTTTACTCTTTGGCCCTCCAGGACTAGGGAAAACAACTATGGCCTTTGTGATTGCCAATGAATTAGGTGTCAATTTA
AAGCAAACATCTGGTCCAGCTATTGAAAAAGCAGGTGATTTAGTTGCCATTTTAAATGATTTAGAGCCTGGCGATGTTCT
CTTTATCGATGAAATCCACAGAATGCCCATGGCTGTCGAGGAAGTCCTATATAGTGCTATGGAAGATTTTTACATTGACA
TCATGATTGGTGCTAGTGATACAAGTCGTAGTGTTCACCTTGATTTACCACCATTCACTTTGATTGGAGCAACCACGCGT
GCAGGTATGCTATCTAATCCTCTTCGTGCTCGTTTTGGAATTACAGGTCATATGGAATATTATGAATTGGATGATTTAAC
AGAGATAGTTGAGCGGACAGCAGATATTTTTGATATGGCCATCGTGAAGGAAGCTGCTATAGAATTAGCAAAACGAAGCC
GTGGAACGCCTAGAATTGCAAATCGACTCTTAAAACGGGTACGTGATTTTGCACAAATAAAAGGAGATGGCACTATTACC
AGTCAAATCACTGATCAAGCACTATCAATGTTAGATGTAGACCAAGAAGGACTTGATTATGTCGATCAAAAAATCCTAAG
AACGATGATTGAAATGTATAATGGTGGTCCAGTTGGTCTTGGGACTTTATCAATAAACATTGCTGAAGAACGAGATACTG
TTGAAGATATGTATGAGCCCTATCTCATTCAAAAAGGTTTTATGATGCGTACTCGTACAGGAAGAGTAGCAACTGCAAAA
GCTTATCAACATTTAGGCTATCCCTTGTCAGAGAAGTAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(256-325)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(20-178)

RuvB AAA lid domain (AAA_lid_4)

(181-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G5KFI3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Streptococcus pneumoniae TIGR4

86.446

100

0.864
  ruvB Streptococcus pneumoniae R6

86.446

100

0.864
  ruvB Streptococcus pneumoniae D39

86.446

100

0.864
  ruvB Bacillus subtilis subsp. subtilis str. 168

60.372

97.289

0.587
  ruvB Helicobacter pylori 26695

50.92

98.193

0.5
  ruvB Synechocystis sp. PCC 6803

49.521

94.277

0.467