Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   SPYH293_RS05940 Genome accession   NZ_HG316453
Coordinates   1216771..1217436 (-) Length   221 a.a.
NCBI ID   WP_031488512.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain H293     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1211771..1222436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPYH293_RS05935 (SPYH293_01213) hpf 1216143..1216691 (-) 549 WP_031488513.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  SPYH293_RS05940 (SPYH293_01214) comFC/cflB 1216771..1217436 (-) 666 WP_031488512.1 ComF family protein Machinery gene
  SPYH293_RS05945 (SPYH293_01215) comFA/cflA 1217408..1218733 (-) 1326 WP_031488511.1 DEAD/DEAH box helicase Machinery gene
  SPYH293_RS05950 (SPYH293_01216) - 1218788..1219420 (+) 633 WP_002983676.1 YigZ family protein -
  SPYH293_RS05955 (SPYH293_01217) cysK 1219548..1220489 (+) 942 WP_031488510.1 cysteine synthase A -
  SPYH293_RS05960 (SPYH293_01218) - 1220507..1220884 (-) 378 WP_002983674.1 S1 RNA-binding domain-containing protein -
  SPYH293_RS05965 (SPYH293_01219) - 1220884..1222284 (-) 1401 WP_031488509.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25151.40 Da        Isoelectric Point: 9.3380

>NTDB_id=989706 SPYH293_RS05940 WP_031488512.1 1216771..1217436(-) (comFC/cflB) [Streptococcus pyogenes strain H293]
MICLLCQQISQTPISITEIIFLRRISSPICQQCQKSFQKIGKSVCATCCANSDIIACQDCLKWENKGYNVNHRSLYCYNA
AMKAYFSQYKFQGDYLLRKVFAVELADVITKYYKGYIPVPVPVSLGCFRERQFNQVSAILEAANVSYLSLFEKLDNTHQS
SRTKKERLLVEKSYRLLKVSNIPDKILIVDDIYTTGSTIIALRKQLAKVANSDIKSLSIAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=989706 SPYH293_RS05940 WP_031488512.1 1216771..1217436(-) (comFC/cflB) [Streptococcus pyogenes strain H293]
ATGATCTGTCTACTATGTCAACAAATTAGTCAAACACCAATAAGTATTACAGAAATCATCTTTTTAAGGCGTATCTCTTC
ACCGATTTGTCAACAATGTCAAAAAAGCTTTCAAAAGATAGGAAAAAGTGTTTGTGCGACATGTTGTGCAAACTCAGATA
TAATAGCTTGTCAAGATTGTCTAAAATGGGAAAACAAAGGATACAATGTAAATCATAGAAGCTTATATTGTTATAATGCT
GCTATGAAAGCATACTTCAGTCAATATAAGTTTCAAGGAGACTATTTATTAAGAAAAGTTTTTGCAGTAGAACTTGCCGA
TGTTATCACCAAGTACTATAAAGGCTATATCCCAGTCCCGGTTCCTGTAAGTCTCGGTTGTTTTCGAGAAAGACAATTTA
ATCAAGTGAGCGCTATTCTTGAGGCAGCTAATGTTAGCTACCTTTCTCTTTTTGAAAAGCTAGATAATACTCACCAATCT
TCCAGAACAAAAAAAGAGAGATTATTAGTAGAAAAATCTTATCGACTACTAAAAGTATCAAACATTCCTGATAAAATCCT
TATAGTAGATGATATTTATACTACTGGTAGTACAATTATCGCTCTTAGAAAACAATTGGCTAAAGTAGCAAATAGTGACA
TTAAAAGTTTGTCAATTGCACGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae Rx1

41.629

100

0.416
  comFC/cflB Streptococcus pneumoniae D39

41.629

100

0.416
  comFC/cflB Streptococcus pneumoniae R6

41.629

100

0.416
  comFC/cflB Streptococcus pneumoniae TIGR4

41.629

100

0.416
  comFC/cflB Streptococcus mitis SK321

41.629

100

0.416
  comFC/cflB Streptococcus mitis NCTC 12261

41.176

100

0.412