Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   SPYH293_RS05245 Genome accession   NZ_HG316453
Coordinates   1070215..1071177 (-) Length   320 a.a.
NCBI ID   WP_053039058.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain H293     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1065215..1076177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPYH293_RS05230 (SPYH293_01074) - 1066052..1066759 (-) 708 WP_002984000.1 O-methyltransferase -
  SPYH293_RS05235 (SPYH293_01075) - 1066825..1068021 (-) 1197 WP_002995765.1 OFA family MFS transporter -
  SPYH293_RS05240 (SPYH293_01076) pepF 1068397..1070202 (-) 1806 WP_011054652.1 oligoendopeptidase F Regulator
  SPYH293_RS05245 (SPYH293_01077) coiA 1070215..1071177 (-) 963 WP_053039058.1 competence protein CoiA Machinery gene
  SPYH293_RS05250 (SPYH293_01078) - 1071473..1072189 (-) 717 WP_002995774.1 pseudouridine synthase -
  SPYH293_RS05255 (SPYH293_01079) nagB 1072308..1073012 (-) 705 WP_002995779.1 glucosamine-6-phosphate deaminase -
  SPYH293_RS05260 (SPYH293_01080) queA 1073214..1074242 (+) 1029 WP_031488549.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  SPYH293_RS05265 (SPYH293_01081) - 1074249..1075469 (+) 1221 WP_002983986.1 DUF3114 domain-containing protein -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 37817.31 Da        Isoelectric Point: 10.2438

>NTDB_id=989698 SPYH293_RS05245 WP_053039058.1 1070215..1071177(-) (coiA) [Streptococcus pyogenes strain H293]
MTKILTALDGKNQLISLVTQPISTKPPFRCPACKSPVRLRQGTIRRPHFAHVQLAHCQFQAENESEEHLTLKAKLYTSLV
RTEAVCIEKYLPELQQIADLWVNDKLALEIQCSPLPVERLKKRTKAYQEKGYPVRWLLGRKLWLNTHLTALQKQFLYFSS
CLGFHLWELDAAANLLRLKYLIHEDLFGKVSYLTKTISLDHNIMEMFRLPYQQEILYSYQKKMTVNLSKRIQRALLARHP
KWLRRQEKAYLSGYNLLMLTTDAFYPQWRPVQSSSGFCQIKGNLRPYYESFKVYYKKEKDKKVQTLFSPKYYVKMDSNRK

Nucleotide


Download         Length: 963 bp        

>NTDB_id=989698 SPYH293_RS05245 WP_053039058.1 1070215..1071177(-) (coiA) [Streptococcus pyogenes strain H293]
GTGACAAAAATATTAACCGCTTTAGATGGTAAGAATCAGCTCATTTCGCTAGTAACTCAGCCTATTTCAACGAAACCGCC
TTTTCGTTGCCCAGCTTGCAAATCTCCTGTTCGCTTGCGTCAGGGGACAATTAGACGACCTCATTTTGCCCATGTACAAC
TAGCTCATTGTCAATTCCAAGCAGAAAATGAATCTGAGGAACATTTGACGTTGAAGGCAAAACTTTACACCAGTTTAGTC
CGAACAGAAGCTGTCTGTATTGAAAAATATCTTCCTGAGCTGCAACAGATAGCAGACCTTTGGGTGAATGATAAGTTAGC
CTTAGAAATTCAGTGCAGTCCCTTGCCAGTTGAGCGTCTAAAGAAACGCACCAAAGCCTATCAAGAAAAGGGGTATCCGG
TACGATGGTTACTGGGAAGAAAATTGTGGCTTAACACTCACTTAACTGCTTTGCAAAAACAGTTTCTTTACTTTTCATCT
TGTTTGGGCTTTCATTTGTGGGAGCTGGATGCAGCTGCAAATCTGCTACGTCTCAAATATTTAATCCATGAAGACTTATT
TGGTAAGGTAAGTTACCTAACCAAAACCATTTCTTTAGACCACAATATTATGGAAATGTTTCGATTACCCTATCAGCAAG
AAATCCTTTATTCTTATCAGAAAAAAATGACTGTGAACCTATCTAAAAGAATACAAAGAGCTCTTTTAGCTAGACACCCG
AAATGGCTACGACGACAAGAAAAGGCTTACTTATCAGGCTATAATTTACTTATGTTAACAACTGATGCTTTTTATCCTCA
ATGGAGACCAGTTCAATCTTCCAGCGGTTTTTGTCAAATTAAAGGAAATCTTCGCCCTTATTATGAAAGTTTTAAAGTCT
ATTATAAAAAAGAAAAGGATAAGAAGGTGCAAACGCTTTTTTCACCAAAATATTATGTTAAAATGGATAGTAATAGAAAA
TGA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(19-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

42.903

96.875

0.416
  coiA Streptococcus pneumoniae Rx1

41.613

96.875

0.403
  coiA Streptococcus pneumoniae D39

41.613

96.875

0.403
  coiA Streptococcus pneumoniae R6

41.613

96.875

0.403
  coiA Streptococcus pneumoniae TIGR4

41.613

96.875

0.403
  coiA Lactococcus lactis subsp. cremoris KW2

39.329

100

0.403