Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   HMPREF9425_RS07335 Genome accession   NZ_GL831112
Coordinates   1521906..1522568 (-) Length   220 a.a.
NCBI ID   WP_003097888.1    Uniprot ID   A0ABN0CF99
Organism   Streptococcus vestibularis ATCC 49124     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1516906..1527568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF9425_RS07315 (HMPREF9425_1533) - 1517125..1517828 (-) 704 Protein_1491 DUF1803 domain-containing protein -
  HMPREF9425_RS07320 (HMPREF9425_1534) - 1517883..1518815 (-) 933 WP_003097884.1 manganese-dependent inorganic pyrophosphatase -
  HMPREF9425_RS07330 (HMPREF9425_1535) hpf 1521279..1521827 (-) 549 WP_003097886.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  HMPREF9425_RS07335 (HMPREF9425_1536) comFC/cflB 1521906..1522568 (-) 663 WP_003097888.1 ComF family protein Machinery gene
  HMPREF9425_RS07340 (HMPREF9425_1537) comFA/cflA 1522549..1523868 (-) 1320 WP_003097890.1 DEAD/DEAH box helicase Machinery gene
  HMPREF9425_RS07345 (HMPREF9425_1538) - 1523923..1524549 (+) 627 WP_003097893.1 YigZ family protein -
  HMPREF9425_RS07350 (HMPREF9425_1539) cysK 1524651..1525577 (+) 927 WP_003097895.1 cysteine synthase A -
  HMPREF9425_RS07355 (HMPREF9425_1540) - 1525742..1526401 (-) 660 WP_003097896.1 CBS and ACT domain-containing protein -
  HMPREF9425_RS07360 (HMPREF9425_1541) - 1526536..1527246 (-) 711 WP_003093126.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25918.28 Da        Isoelectric Point: 8.7366

>NTDB_id=989543 HMPREF9425_RS07335 WP_003097888.1 1521906..1522568(-) (comFC/cflB) [Streptococcus vestibularis ATCC 49124]
MKCLLCNEWIESVAQLSDLIMFKQRREYSCEDCKGQFKKLGKARCSNCYKIIDGNSCIDCKIWAKKGYIPKHFAIYCYEE
NMKEYFSRYKFMGDYCLRKIFQQEIKANLKPFLKKGYILVPVPLSEERLEDRGFNQVKGLLEGIPYKNIFEKRDIEKQSS
RTREERLSQDNPFSLKKGIELPSKIIIIDDIYTTGSTLYQMVKLLDDLDVKEVLTFSLAR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=989543 HMPREF9425_RS07335 WP_003097888.1 1521906..1522568(-) (comFC/cflB) [Streptococcus vestibularis ATCC 49124]
ATGAAGTGTCTACTATGTAATGAATGGATTGAATCAGTAGCTCAATTAAGTGATTTAATTATGTTTAAACAAAGAAGAGA
GTATTCTTGTGAAGATTGTAAAGGTCAATTTAAAAAGCTTGGGAAGGCGAGATGTTCAAATTGTTATAAAATAATAGATG
GAAATAGTTGCATTGATTGCAAAATTTGGGCGAAAAAAGGCTATATTCCAAAACATTTTGCCATTTATTGTTATGAAGAA
AATATGAAAGAGTATTTTAGTCGCTATAAATTTATGGGAGATTATTGCCTTAGAAAAATATTTCAACAAGAAATTAAAGC
CAATTTAAAGCCTTTTTTAAAGAAAGGTTATATCTTAGTACCTGTCCCCTTGTCGGAAGAACGGCTGGAAGATAGAGGAT
TCAATCAAGTTAAAGGATTACTAGAGGGAATCCCCTATAAAAACATTTTTGAAAAAAGAGACATCGAGAAGCAATCCTCG
AGAACACGCGAAGAGAGGTTAAGTCAAGATAATCCTTTCAGTTTGAAGAAAGGTATTGAGCTGCCAAGTAAGATCATCAT
AATCGATGATATTTACACAACAGGATCTACCCTGTATCAAATGGTCAAACTATTGGATGACTTAGATGTCAAAGAAGTTT
TGACCTTTTCCTTAGCTAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

44.595

100

0.45
  comFC/cflB Streptococcus mitis SK321

44.144

100

0.445
  comFC/cflB Streptococcus pneumoniae Rx1

43.694

100

0.441
  comFC/cflB Streptococcus pneumoniae D39

43.694

100

0.441
  comFC/cflB Streptococcus pneumoniae R6

43.694

100

0.441
  comFC/cflB Streptococcus pneumoniae TIGR4

43.694

100

0.441