Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   HMPREF9425_RS06985 Genome accession   NZ_GL831112
Coordinates   1451839..1452798 (-) Length   319 a.a.
NCBI ID   WP_003097764.1    Uniprot ID   A0ABP2KJ67
Organism   Streptococcus vestibularis ATCC 49124     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1446839..1457798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF9425_RS06970 (HMPREF9425_1458) - 1447807..1448514 (-) 708 WP_003097755.1 O-methyltransferase -
  HMPREF9425_RS06975 (HMPREF9425_1459) - 1448572..1449807 (-) 1236 WP_037621559.1 L-lactate MFS transporter -
  HMPREF9425_RS06980 (HMPREF9425_1460) pepF 1450023..1451828 (-) 1806 WP_003097758.1 oligoendopeptidase F Regulator
  HMPREF9425_RS06985 (HMPREF9425_1461) coiA 1451839..1452798 (-) 960 WP_003097764.1 competence protein CoiA Machinery gene
  HMPREF9425_RS06995 (HMPREF9425_1462) - 1454113..1454796 (+) 684 WP_037621563.1 LysR family transcriptional regulator -
  HMPREF9425_RS10395 (HMPREF9425_1463) - 1454847..1455075 (+) 229 Protein_1427 LysR family transcriptional regulator -
  HMPREF9425_RS07000 (HMPREF9425_1464) metG 1455354..1457357 (-) 2004 WP_003097774.1 methionine--tRNA ligase -
  HMPREF9425_RS07005 (HMPREF9425_1465) - 1457466..1457705 (-) 240 WP_003095552.1 hypothetical protein -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 37889.90 Da        Isoelectric Point: 9.5893

>NTDB_id=989538 HMPREF9425_RS06985 WP_003097764.1 1451839..1452798(-) (coiA) [Streptococcus vestibularis ATCC 49124]
MLIAKNTEGKLVSALETSLQRKEPYSCPGCQGVVLLRHGQVMCPHFAHKSLQDCQFFSENESAQHLSLKAALYKSLVNHG
EKVSIEKVLFEMGQIADLFVGDSLALEVQCSRLSQQRLRERTCAYHQAGYEVRWLLGEELWLNGRLTDLQRDFLYFTAKI
GFHLWELDWKREEIRLKYLIYEDIFGKVYYLTKAWPLTENLMTVLRFPYQVEKGETYKVTQRKKVSHVIQRELMGKNPRW
LRRQEEAYLKGMNLLCLSDQDFFPQVRFPESKQGFVQIRLSIDDFKKLFMQYYRKRHFSYKQTLYPPTFYAKIVKNRHN

Nucleotide


Download         Length: 960 bp        

>NTDB_id=989538 HMPREF9425_RS06985 WP_003097764.1 1451839..1452798(-) (coiA) [Streptococcus vestibularis ATCC 49124]
ATGTTAATTGCAAAAAATACGGAAGGAAAATTGGTTTCAGCTCTAGAAACCAGTTTGCAACGTAAAGAACCCTATAGCTG
TCCTGGTTGCCAGGGAGTTGTCCTATTGAGGCATGGCCAGGTAATGTGTCCACATTTTGCTCACAAGTCTTTGCAAGATT
GTCAGTTCTTCTCAGAGAATGAATCGGCCCAACATTTATCCCTTAAGGCAGCCTTATATAAATCTTTGGTTAATCATGGT
GAAAAAGTAAGTATTGAAAAGGTTTTGTTCGAGATGGGGCAAATTGCAGATTTATTTGTTGGAGATTCCTTAGCCTTGGA
AGTTCAGTGTTCTCGGTTATCCCAGCAACGTTTGAGAGAAAGGACATGTGCCTATCACCAAGCAGGTTACGAAGTGCGTT
GGCTTTTGGGTGAGGAACTCTGGTTGAATGGTCGTTTAACAGACTTACAGCGGGACTTTCTCTATTTTACGGCTAAGATA
GGATTTCACCTGTGGGAGCTTGATTGGAAGCGAGAGGAAATTAGACTTAAGTATCTCATCTATGAGGATATTTTTGGGAA
AGTCTATTATTTAACTAAGGCCTGGCCGTTAACCGAAAATCTCATGACAGTTCTACGTTTTCCTTATCAAGTAGAGAAGG
GTGAGACCTATAAAGTTACTCAGCGAAAGAAGGTCTCACATGTGATTCAACGAGAATTAATGGGGAAAAATCCAAGGTGG
CTGAGAAGGCAGGAAGAAGCCTATCTTAAGGGAATGAATTTGTTATGTCTATCTGATCAGGATTTTTTTCCACAAGTGAG
ATTTCCTGAATCTAAGCAAGGATTTGTCCAAATTAGATTATCTATTGATGATTTTAAAAAGCTTTTCATGCAATATTATC
GAAAAAGACATTTTTCTTACAAGCAAACCCTCTACCCTCCCACCTTTTATGCTAAAATAGTAAAGAATAGACACAATTAA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

44.409

98.119

0.436
  coiA Streptococcus pneumoniae TIGR4

44.373

97.492

0.433
  coiA Streptococcus pneumoniae Rx1

44.373

97.492

0.433
  coiA Streptococcus pneumoniae D39

44.373

97.492

0.433
  coiA Streptococcus pneumoniae R6

44.373

97.492

0.433
  coiA Lactococcus lactis subsp. cremoris KW2

36.061

100

0.373