Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   HMPREF9425_RS05780 Genome accession   NZ_GL831112
Coordinates   1180005..1180652 (+) Length   215 a.a.
NCBI ID   WP_003097450.1    Uniprot ID   A0ABP2KNF2
Organism   Streptococcus vestibularis ATCC 49124     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1175005..1185652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF9425_RS05755 (HMPREF9425_1206) typA 1175209..1177059 (-) 1851 WP_003094855.1 translational GTPase TypA -
  HMPREF9425_RS05760 (HMPREF9425_1207) - 1177198..1178166 (-) 969 WP_003094633.1 ROK family glucokinase -
  HMPREF9425_RS05765 (HMPREF9425_1208) - 1178159..1178365 (-) 207 WP_003097448.1 YqgQ family protein -
  HMPREF9425_RS05770 (HMPREF9425_1209) - 1178849..1179286 (-) 438 WP_003097449.1 Fur family transcriptional regulator -
  HMPREF9425_RS05775 (HMPREF9425_1210) - 1179375..1179896 (-) 522 WP_003093383.1 Dps family protein -
  HMPREF9425_RS05780 (HMPREF9425_1211) cclA/cilC 1180005..1180652 (+) 648 WP_003097450.1 prepilin peptidase Machinery gene
  HMPREF9425_RS05785 (HMPREF9425_1212) - 1180692..1182081 (-) 1390 WP_003097451.1 serine hydrolase -
  HMPREF9425_RS05790 (HMPREF9425_1213) sodA 1182225..1182830 (-) 606 WP_003097452.1 superoxide dismutase SodA -
  HMPREF9425_RS05795 (HMPREF9425_1214) holA 1182925..1183959 (-) 1035 WP_003097453.1 DNA polymerase III subunit delta -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24808.82 Da        Isoelectric Point: 8.3849

>NTDB_id=989527 HMPREF9425_RS05780 WP_003097450.1 1180005..1180652(+) (cclA/cilC) [Streptococcus vestibularis ATCC 49124]
MLSILYFFLGASLGSFIGLICDRFPEKSIIFPRSHCNQCGHPLRFFEMIPILSQLFLRFRCRLCQSSIPYRYLFLELFCG
GILLLYFYDYLDFGRTYLLLFSLCVTIFDLKNKSYPLLIWVLGTLALLCLGNHYLTFTLGISLAALSYFKRLNIGEGDFL
YLASVSLIFPFSKILLAIELACLFGLTYFLVRRNPNETVAFVPFLFVSVLILTFM

Nucleotide


Download         Length: 648 bp        

>NTDB_id=989527 HMPREF9425_RS05780 WP_003097450.1 1180005..1180652(+) (cclA/cilC) [Streptococcus vestibularis ATCC 49124]
ATGCTTAGTATTTTATATTTTTTTCTTGGTGCCTCTTTAGGCTCGTTTATTGGATTGATTTGTGATCGTTTTCCTGAGAA
GTCGATTATTTTTCCCAGAAGCCATTGCAATCAGTGTGGGCATCCGTTACGTTTTTTCGAAATGATTCCTATCCTATCGC
AACTTTTCTTAAGATTCAGATGTCGGTTATGCCAAAGCTCTATCCCATACCGTTACCTCTTCTTGGAATTGTTTTGTGGA
GGAATACTTCTTCTTTATTTCTATGACTACCTAGATTTCGGAAGAACCTATTTGCTTCTTTTCAGTCTTTGTGTAACTAT
TTTTGATTTAAAAAATAAATCATATCCCCTTCTAATTTGGGTTCTTGGAACACTAGCTCTCCTTTGTTTGGGAAACCACT
ACCTCACTTTTACCTTAGGAATAAGTTTAGCCGCCCTATCGTATTTCAAACGTTTAAATATTGGTGAAGGTGATTTTCTC
TATTTGGCCAGTGTCTCCCTCATTTTCCCATTTTCCAAAATACTATTAGCTATTGAACTAGCTTGCCTATTTGGGCTTAC
GTACTTCCTAGTACGTAGAAACCCTAATGAAACAGTAGCTTTTGTCCCATTTCTCTTTGTGAGTGTTCTAATTCTTACCT
TCATGTAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

39.252

99.535

0.391
  cclA/cilC Streptococcus pneumoniae TIGR4

39.252

99.535

0.391
  cclA/cilC Streptococcus mitis NCTC 12261

38.785

99.535

0.386
  cclA/cilC Streptococcus pneumoniae Rx1

37.85

99.535

0.377
  cclA/cilC Streptococcus pneumoniae D39

37.85

99.535

0.377
  cclA/cilC Streptococcus pneumoniae R6

37.85

99.535

0.377