Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AAG068_RS27405 Genome accession   NZ_CP152427
Coordinates   5278552..5279073 (-) Length   173 a.a.
NCBI ID   WP_000981967.1    Uniprot ID   A0A063CSK8
Organism   Bacillus paramycoides strain JYZ-SD5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5273552..5284073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAG068_RS27385 (AAG068_27385) rplI 5274762..5275208 (-) 447 WP_342716547.1 50S ribosomal protein L9 -
  AAG068_RS27390 (AAG068_27390) - 5275205..5277178 (-) 1974 WP_001113895.1 DHH family phosphoesterase -
  AAG068_RS27395 (AAG068_27395) - 5277257..5278192 (-) 936 WP_342716548.1 YybS family protein -
  AAG068_RS27400 (AAG068_27400) rpsR 5278273..5278506 (-) 234 WP_000918873.1 30S ribosomal protein S18 -
  AAG068_RS27405 (AAG068_27405) ssbA 5278552..5279073 (-) 522 WP_000981967.1 single-stranded DNA-binding protein Machinery gene
  AAG068_RS27410 (AAG068_27410) rpsF 5279100..5279390 (-) 291 WP_001233778.1 30S ribosomal protein S6 -
  AAG068_RS27415 (AAG068_27415) ychF 5279582..5280682 (-) 1101 WP_342716549.1 redox-regulated ATPase YchF -
  AAG068_RS27420 (AAG068_27420) - 5280798..5280995 (-) 198 WP_000436051.1 DUF951 domain-containing protein -
  AAG068_RS27425 (AAG068_27425) - 5281016..5281897 (-) 882 WP_342716551.1 mechanosensitive ion channel family protein -
  AAG068_RS27430 (AAG068_27430) yyaC 5282157..5282753 (+) 597 WP_342716552.1 spore protease YyaC -
  AAG068_RS27435 (AAG068_27435) spo0J 5282774..5283625 (-) 852 WP_342716553.1 stage 0 sporulation protein Spo0J -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18823.61 Da        Isoelectric Point: 4.9327

>NTDB_id=989346 AAG068_RS27405 WP_000981967.1 5278552..5279073(-) (ssbA) [Bacillus paramycoides strain JYZ-SD5]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYEGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQSSNPFGQSSNSGNQGNQGNSGFTKNDDPFSNV
GQPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=989346 AAG068_RS27405 WP_000981967.1 5278552..5279073(-) (ssbA) [Bacillus paramycoides strain JYZ-SD5]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCGAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGATGGGCGTCTTCAAACTCGT
AATTACGAGGGACAAGATGGTAAACGTGTATATGTAACAGAAGTTCTTGCGGAAAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTTAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAAGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGCAACCAAGGTAACCAAGGAAACTCTGGATTTACGAAGAATGACGATCCATTTTCAAATGTA
GGTCAACCGATCGACATTTCTGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063CSK8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

72.316

100

0.74
  ssb Latilactobacillus sakei subsp. sakei 23K

58.286

100

0.59
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

61.272

0.399
  ssb Glaesserella parasuis strain SC1401

36.264

100

0.382

Multiple sequence alignment