Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   AAFQ93_RS03535 Genome accession   NZ_CP152419
Coordinates   728394..730352 (+) Length   652 a.a.
NCBI ID   WP_223140541.1    Uniprot ID   -
Organism   Streptococcus nidrosiense strain SO-23-1     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 723394..735352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFQ93_RS03525 (AAFQ93_03520) - 724486..726096 (+) 1611 WP_375555636.1 alpha-glucosidase -
  AAFQ93_RS03530 (AAFQ93_03525) amiA 726268..728235 (+) 1968 WP_223140540.1 peptide ABC transporter substrate-binding protein Regulator
  AAFQ93_RS03535 (AAFQ93_03530) amiA3 728394..730352 (+) 1959 WP_223140541.1 peptide ABC transporter substrate-binding protein Regulator
  AAFQ93_RS03540 (AAFQ93_03535) - 730752..732197 (+) 1446 WP_375555638.1 LCP family protein -
  AAFQ93_RS03545 (AAFQ93_03540) cps4B 732199..732930 (+) 732 WP_375555640.1 capsular polysaccharide biosynthesis protein Cps4B -
  AAFQ93_RS03550 (AAFQ93_03545) - 732939..733631 (+) 693 WP_375555642.1 CspC family polysaccharide chain length determinant protein -
  AAFQ93_RS03555 (AAFQ93_03550) - 733642..734325 (+) 684 WP_223140545.1 tyrosine-protein kinase -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72068.85 Da        Isoelectric Point: 4.7180

>NTDB_id=989161 AAFQ93_RS03535 WP_223140541.1 728394..730352(+) (amiA3) [Streptococcus nidrosiense strain SO-23-1]
MKLKKRLIGAGLTLAAAVLLTACGQSASDGKTYSSTFGADPTTFNYLLDYAGDNTAIVTNLIDGLLENDNYGNLIPALAE
DWSVSKDGLTYTYKLRQDAKWFTADGEEYAPLKAQDFVTGIKYAADNKGQALDLIQNSIKGLDDYVTGANTDFSNVGVKA
LDDYTVQYTLTRPEPFWNSKTTNSILFPVNEEFLASKGKDFGTLKPDSILYSGPYLLKDFTSKSSIEYVKNPHYYDQEKV
TIEKVKLAYFDGSDQDLTIRNFESGAYSSAGVYPNSSNFAKTKEKYKDNIVYSLQDATSWYYNFNVNRGAYSHTAKTSDE
QKQATQAAVLNKNFRQAINFAIDRTAYSAQSNGEEAAKNTLRNSLVPPTFVQVGDKTFGETVASKLVNYGTQWSNMNLED
AQDGYFNKEKAQAKFAEAKKELEAQGVSFPIHLDLPVDQVNKTLLSGTNSIKQSIESTLGSENVVVDVIQLSTDDYTNAT
VQAPTPADHDYDLNLDGWSADYQDPSTYLNPFNAEDGFYLKILGLDPSKDANKITSLGLDQFTQKLKTADAENTDVAKRY
ENYADAQAWLIDSSLLIPVVSNGGGASVTRVTPFTRAYSLVGIKGTGSNYKYMRLQTDVVTSSQFAEAKAKWEQERKNSV
EKSQKDFESHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=989161 AAFQ93_RS03535 WP_223140541.1 728394..730352(+) (amiA3) [Streptococcus nidrosiense strain SO-23-1]
ATGAAACTTAAAAAACGTTTGATTGGAGCGGGGTTGACACTTGCTGCTGCGGTCCTATTGACAGCATGTGGCCAGTCAGC
ATCAGACGGCAAGACATACTCGTCTACCTTTGGTGCAGATCCAACAACCTTCAACTATCTCTTGGACTACGCTGGTGATA
ACACTGCTATTGTAACCAACTTGATTGATGGTTTGCTTGAAAATGATAACTACGGAAACCTCATTCCTGCCCTTGCAGAA
GATTGGAGTGTTTCTAAGGATGGTTTAACTTATACCTACAAACTTCGCCAAGATGCCAAGTGGTTTACAGCTGACGGTGA
AGAATACGCTCCCCTTAAAGCACAAGACTTTGTAACTGGTATCAAGTATGCTGCTGACAACAAGGGACAAGCTTTGGACT
TGATTCAGAACTCTATCAAGGGCTTGGATGATTATGTAACAGGTGCAAATACTGACTTCTCAAATGTTGGTGTCAAAGCC
TTAGATGACTATACTGTCCAATATACCTTGACTCGTCCAGAGCCATTCTGGAACTCAAAAACAACCAACAGTATCTTATT
CCCTGTAAACGAAGAATTCCTTGCTTCTAAAGGTAAAGACTTCGGAACCCTGAAACCAGATAGCATTCTTTATAGCGGAC
CATATTTGTTAAAAGATTTTACATCTAAGTCTTCTATCGAATATGTGAAAAACCCACATTACTATGACCAAGAAAAAGTA
ACGATTGAAAAGGTAAAATTGGCCTACTTTGATGGTTCAGACCAAGACTTGACAATTCGTAACTTTGAAAGTGGTGCTTA
CTCATCTGCAGGTGTTTATCCAAATAGCTCAAACTTTGCTAAGACAAAGGAAAAATACAAGGACAATATCGTTTATAGCT
TGCAAGATGCAACATCTTGGTACTATAACTTTAACGTTAATCGTGGTGCTTATAGCCATACTGCAAAAACAAGCGATGAA
CAAAAACAAGCAACTCAAGCTGCAGTTTTGAATAAAAACTTCCGTCAGGCAATTAACTTCGCCATTGATCGTACAGCCTA
CTCAGCTCAATCAAATGGTGAAGAAGCAGCTAAGAACACCCTTCGTAACTCGCTTGTACCACCAACTTTCGTACAAGTTG
GAGACAAGACTTTTGGTGAAACAGTTGCTTCAAAATTGGTCAACTATGGTACACAATGGTCGAATATGAATCTTGAAGAT
GCTCAAGACGGTTATTTCAATAAAGAAAAAGCACAAGCCAAGTTTGCTGAAGCTAAAAAAGAATTAGAAGCCCAAGGTGT
GAGCTTCCCAATTCATTTGGACTTGCCTGTAGACCAGGTTAACAAGACCTTGCTTTCTGGAACAAACTCAATCAAACAAT
CAATTGAATCAACACTTGGTTCTGAAAATGTAGTGGTTGACGTTATCCAATTATCGACGGATGATTATACAAACGCAACA
GTTCAAGCACCAACTCCTGCAGATCACGACTATGATTTGAATTTGGATGGATGGTCAGCTGACTATCAAGATCCTTCAAC
TTACCTCAATCCTTTCAACGCTGAAGATGGATTCTATCTCAAGATTTTGGGACTTGATCCAAGCAAGGATGCAAATAAGA
TTACTAGTCTAGGTTTGGACCAATTTACTCAAAAATTAAAAACAGCAGATGCAGAAAATACAGATGTAGCTAAGCGCTAT
GAAAACTATGCAGACGCACAAGCTTGGTTGATTGATAGTTCCCTTCTAATCCCAGTTGTGTCAAACGGTGGTGGTGCTTC
AGTGACTCGTGTGACACCATTTACACGCGCTTACTCACTAGTTGGTATCAAAGGAACTGGAAGTAACTACAAGTACATGA
GATTGCAGACAGATGTTGTTACAAGCTCTCAATTTGCTGAAGCGAAGGCTAAATGGGAACAAGAACGTAAAAATTCTGTC
GAAAAGAGTCAAAAAGACTTTGAAAGTCACGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

52.128

100

0.526
  amiA3 Streptococcus thermophilus LMG 18311

51.672

100

0.521
  amiA Streptococcus salivarius strain HSISS4

51.75

100

0.521

Multiple sequence alignment