Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   AAFQ93_RS03530 Genome accession   NZ_CP152419
Coordinates   726268..728235 (+) Length   655 a.a.
NCBI ID   WP_223140540.1    Uniprot ID   -
Organism   Streptococcus nidrosiense strain SO-23-1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 721268..733235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFQ93_RS03515 (AAFQ93_03510) - 722400..722675 (-) 276 WP_045762826.1 hypothetical protein -
  AAFQ93_RS03520 (AAFQ93_03515) - 722851..724335 (-) 1485 WP_045762827.1 DUF1846 domain-containing protein -
  AAFQ93_RS03525 (AAFQ93_03520) - 724486..726096 (+) 1611 WP_375555636.1 alpha-glucosidase -
  AAFQ93_RS03530 (AAFQ93_03525) amiA 726268..728235 (+) 1968 WP_223140540.1 peptide ABC transporter substrate-binding protein Regulator
  AAFQ93_RS03535 (AAFQ93_03530) amiA3 728394..730352 (+) 1959 WP_223140541.1 peptide ABC transporter substrate-binding protein Regulator
  AAFQ93_RS03540 (AAFQ93_03535) - 730752..732197 (+) 1446 WP_375555638.1 LCP family protein -
  AAFQ93_RS03545 (AAFQ93_03540) cps4B 732199..732930 (+) 732 WP_375555640.1 capsular polysaccharide biosynthesis protein Cps4B -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72507.04 Da        Isoelectric Point: 4.9980

>NTDB_id=989160 AAFQ93_RS03530 WP_223140540.1 726268..728235(+) (amiA) [Streptococcus nidrosiense strain SO-23-1]
MKSKKWLAVAGITMSAALLLTACGKTEKKADAPTTFSYVYAIDPTTLDYSVTSKSSTSDVIANLVDGLLENDKYGNLIPS
LAEDWSVSQDGLTYTYKLRKGVKWYTSEGEEYAEVKAQDFVTGLKHAADGKSDGLTLIQDSIKGLAEYVSGETNDFSTVG
VKAIDDYTVQYTLNQPESFWNSKVTTATMLPVNEEFLNSQGKDYGAAAPSGILYNGPYILKNFTSKSVIEYEKNPNYWDK
DNVKIDHVKLTFYDGSDQESLIRSFSSGAYTTARLFPTSSSFDSTKKEYGDKIVYSPQEATSYYFTFNVNRQSYNKTAKT
DEAQKTSTKEALLNKNFRQAINFALDRHAYSAQMNGEEGADKIIRTSLVPYDYVQVGEKTFGELAQEQLVTYGDQWKDVA
LTDGKDTLYNPTKAKAAFEKAKSELQAKGVTFPIHLDIPVEQTDVIAVQQTNSLKQSVEAALGSENVVIDVLQMTDNEKM
SITSQAKVPSQKDYDLNGTGWGPDYQDPATYLNILDAKKGSALKHLGITKGKDSEVMAQVGLDEYKKLLDDAASETSDLN
KRYEKYAKAQAWVSDSSLLIPVASSGGSPTVSRTVPFTKAYSQVGIKGDPFVFKGLELQNDIVTAKEYEEALKKWQKEKI
ETNAKYQKELANHVK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=989160 AAFQ93_RS03530 WP_223140540.1 726268..728235(+) (amiA) [Streptococcus nidrosiense strain SO-23-1]
ATGAAATCGAAAAAGTGGCTCGCAGTAGCAGGGATAACGATGAGCGCAGCTCTTCTTTTGACAGCTTGTGGCAAGACTGA
GAAAAAAGCAGATGCTCCAACAACATTTTCGTATGTATATGCCATTGATCCAACAACATTGGACTATAGTGTTACTAGTA
AAAGTTCAACATCAGACGTCATTGCCAACTTGGTCGACGGACTCTTGGAAAATGACAAATATGGGAACTTGATTCCATCG
CTTGCTGAAGACTGGTCTGTTTCACAGGACGGTTTGACCTACACCTACAAGCTACGTAAAGGTGTCAAATGGTATACTTC
AGAAGGAGAAGAGTATGCTGAAGTAAAGGCCCAAGACTTTGTGACAGGTTTGAAGCATGCTGCAGATGGTAAATCAGATG
GCCTAACTCTTATCCAAGACTCTATCAAAGGTTTGGCAGAGTATGTCAGCGGTGAAACAAATGACTTCTCAACAGTTGGA
GTTAAAGCAATTGACGACTACACTGTTCAATACACCTTGAACCAACCAGAAAGCTTCTGGAATTCTAAGGTGACAACAGC
GACTATGCTCCCTGTTAATGAAGAATTCTTAAATTCTCAAGGAAAAGATTACGGTGCGGCAGCTCCTTCAGGTATTCTCT
ACAATGGTCCGTATATTTTGAAAAACTTCACTTCAAAATCCGTGATCGAGTACGAAAAGAACCCAAATTATTGGGACAAA
GACAATGTTAAAATTGACCACGTCAAACTTACTTTCTACGATGGATCTGACCAAGAATCATTGATTCGTAGTTTCTCATC
AGGAGCCTATACAACAGCTCGTCTCTTCCCAACTAGCTCAAGCTTTGATTCAACTAAGAAAGAATACGGCGATAAGATCG
TTTATAGTCCGCAAGAAGCGACAAGCTATTACTTTACTTTCAACGTAAATCGTCAGTCTTACAATAAAACAGCTAAGACA
GATGAAGCCCAAAAAACATCAACTAAAGAAGCGCTTCTCAATAAAAACTTCCGTCAAGCTATCAACTTCGCTCTTGACCG
TCATGCTTACTCTGCACAGATGAATGGCGAAGAAGGTGCAGACAAGATTATCCGTACTAGCCTTGTGCCTTATGACTATG
TTCAAGTTGGTGAAAAGACCTTCGGTGAATTGGCTCAAGAACAATTGGTAACATACGGAGACCAGTGGAAGGATGTAGCT
TTGACAGATGGTAAAGATACCCTTTACAATCCAACAAAAGCAAAAGCTGCTTTTGAAAAAGCAAAATCAGAATTGCAAGC
TAAAGGTGTAACCTTCCCAATCCATTTGGATATTCCAGTTGAGCAGACTGATGTCATTGCTGTACAGCAAACCAACTCTC
TCAAACAGTCTGTCGAAGCAGCACTTGGAAGTGAAAATGTTGTCATCGATGTACTTCAAATGACTGACAATGAGAAAATG
AGCATTACATCTCAAGCTAAAGTTCCTTCTCAAAAAGACTATGACTTGAACGGAACTGGTTGGGGGCCAGACTATCAAGA
CCCAGCAACCTACCTCAATATCTTAGATGCTAAGAAGGGTTCTGCTCTTAAACACTTGGGTATCACAAAAGGTAAAGATT
CAGAAGTTATGGCTCAAGTTGGACTTGATGAGTACAAGAAACTCTTGGATGATGCAGCATCAGAAACAAGCGATCTTAAC
AAACGCTATGAAAAATATGCCAAAGCACAAGCTTGGGTTTCAGATAGCTCACTTCTTATCCCTGTAGCTTCTTCAGGTGG
TTCTCCGACAGTTAGCCGTACAGTGCCATTCACAAAAGCTTACTCTCAAGTTGGTATTAAGGGAGATCCATTTGTATTTA
AAGGTTTAGAATTGCAAAACGATATTGTAACAGCTAAAGAATACGAAGAAGCTCTCAAGAAATGGCAAAAAGAGAAAATT
GAAACAAATGCCAAATACCAAAAAGAACTAGCAAATCACGTTAAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

54.863

100

0.551
  amiA3 Streptococcus thermophilus LMD-9

54.021

100

0.544
  amiA3 Streptococcus thermophilus LMG 18311

53.566

100

0.539

Multiple sequence alignment