Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   AAFQ93_RS01910 Genome accession   NZ_CP152419
Coordinates   392984..393742 (-) Length   252 a.a.
NCBI ID   WP_045762401.1    Uniprot ID   -
Organism   Streptococcus nidrosiense strain SO-23-1     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 387984..398742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFQ93_RS01885 (AAFQ93_01890) pth 388009..388578 (-) 570 WP_375555465.1 aminoacyl-tRNA hydrolase -
  AAFQ93_RS01890 (AAFQ93_01895) ychF 388651..389766 (-) 1116 WP_045762398.1 redox-regulated ATPase YchF -
  AAFQ93_RS01895 (AAFQ93_01900) - 389852..390046 (-) 195 WP_000285188.1 DUF951 domain-containing protein -
  AAFQ93_RS01900 (AAFQ93_01905) dnaN 390113..391249 (-) 1137 WP_045762399.1 DNA polymerase III subunit beta -
  AAFQ93_RS01905 (AAFQ93_01910) dnaA 391407..392762 (-) 1356 WP_045762400.1 chromosomal replication initiator protein DnaA -
  AAFQ93_RS01910 (AAFQ93_01915) spo0J 392984..393742 (-) 759 WP_045762401.1 ParB/RepB/Spo0J family partition protein Regulator
  AAFQ93_RS01915 (AAFQ93_01920) htrA 393799..394983 (-) 1185 WP_000793272.1 S1C family serine protease Regulator
  AAFQ93_RS01920 (AAFQ93_01925) rlmH 395167..395646 (+) 480 WP_000695942.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  AAFQ93_RS01930 (AAFQ93_01935) comC 395929..396063 (+) 135 WP_080936286.1 competence-stimulating peptide ComC -
  AAFQ93_RS01935 (AAFQ93_01940) comD 396086..397405 (+) 1320 WP_045762404.1 competence system sensor histidine kinase ComD Regulator
  AAFQ93_RS01940 (AAFQ93_01945) comE 397402..398154 (+) 753 WP_049530388.1 competence system response regulator transcription factor ComE Regulator

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 29134.66 Da        Isoelectric Point: 9.9399

>NTDB_id=989149 AAFQ93_RS01910 WP_045762401.1 392984..393742(-) (spo0J) [Streptococcus nidrosiense strain SO-23-1]
MEEFKIVQIKDIQKNPYQPRKEFSEEKIQELAQSIKENGLIQPIIVRKSPVLGYEILAGERRYRASIAAGLSEVPVIVKQ
LSDQDMMLHSIIENLQRENLNPIEEAKAYQSLIDKGFTHTEIAEKMGKSRPYITNLVRLLGLPKHILTEVESGRLSQAHA
RLLIQLSSDKQDKLLNRIQTENLSVRQVEQILQKTKKSSRKEKDHFVKDEEQKLKKILGLDVQIKLQKKDSGKISISFHN
QDEYQQFINSLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=989149 AAFQ93_RS01910 WP_045762401.1 392984..393742(-) (spo0J) [Streptococcus nidrosiense strain SO-23-1]
ATGGAAGAATTTAAAATTGTTCAAATAAAAGATATTCAAAAAAATCCCTATCAACCTCGTAAGGAATTTTCAGAAGAAAA
AATTCAAGAACTGGCACAATCTATTAAGGAAAACGGCTTGATTCAGCCTATTATCGTTAGAAAATCTCCAGTACTTGGAT
ATGAAATTCTAGCTGGAGAAAGACGGTATCGTGCTTCAATAGCTGCTGGACTTTCAGAAGTTCCAGTCATTGTTAAGCAA
CTTTCTGATCAAGATATGATGCTTCATTCTATCATTGAGAATCTCCAACGAGAAAATTTAAATCCTATCGAGGAAGCTAA
AGCATATCAATCCTTAATTGATAAAGGTTTTACCCACACAGAAATTGCTGAAAAAATGGGGAAATCTCGACCTTATATTA
CAAACCTAGTTCGATTGTTAGGATTACCTAAACATATCCTGACAGAAGTTGAAAGTGGTAGACTTTCTCAAGCTCATGCT
AGACTCCTCATTCAATTATCAAGTGATAAACAAGATAAACTCTTGAATCGTATTCAAACTGAAAATCTCTCTGTTCGACA
AGTTGAACAAATACTACAAAAAACGAAGAAGAGCAGCAGAAAAGAAAAAGACCACTTTGTCAAAGACGAAGAGCAAAAAT
TGAAAAAAATACTCGGATTAGATGTTCAGATTAAGCTACAAAAAAAAGATAGTGGTAAAATTTCAATTTCCTTCCATAAC
CAAGATGAATACCAACAATTTATTAACAGCCTGAAATAA

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(146-193)

ParB/Sulfiredoxin domain (ParB_N)

(7-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

52.964

100

0.532

Multiple sequence alignment