Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AAFF19_RS00170 Genome accession   NZ_CP152407
Coordinates   35880..36446 (-) Length   188 a.a.
NCBI ID   WP_008903883.1    Uniprot ID   -
Organism   Acidovorax sp. FHTAMBA     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 30880..41446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFF19_RS00145 (AAFF19_00145) trxA 30949..31857 (-) 909 WP_182120648.1 thioredoxin -
  AAFF19_RS00150 (AAFF19_00150) purE 32013..32507 (+) 495 WP_055395445.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  AAFF19_RS00155 (AAFF19_00155) - 32504..33679 (+) 1176 WP_182120647.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  AAFF19_RS00160 (AAFF19_00160) - 33696..34712 (+) 1017 WP_182120646.1 L-threonylcarbamoyladenylate synthase -
  AAFF19_RS00165 (AAFF19_00165) - 34789..35742 (+) 954 WP_182120645.1 SGNH/GDSL hydrolase family protein -
  AAFF19_RS00170 (AAFF19_00170) ssb 35880..36446 (-) 567 WP_008903883.1 single-stranded DNA-binding protein Machinery gene
  AAFF19_RS00175 (AAFF19_00175) - 36573..37751 (-) 1179 WP_182120664.1 MFS transporter -
  AAFF19_RS00180 (AAFF19_00180) uvrA 37902..40949 (+) 3048 WP_182120644.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 19978.11 Da        Isoelectric Point: 5.9554

>NTDB_id=988908 AAFF19_RS00170 WP_008903883.1 35880..36446(-) (ssb) [Acidovorax sp. FHTAMBA]
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVTIATTDKWKDKQSGEMKEATEWHRVVFNGRLAEIAGQYLRKGSQVYVEG
SLRTRKWTDQSGVEKYSTEIRADQMQMLGSRQGMGGQGGGGGGQQGGGYDDGGYGGGEQGGGYDQAPRRAAPAPRPMAAP
AQRAAPAPVAQPPRAASGFDDMDDDIPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=988908 AAFF19_RS00170 WP_008903883.1 35880..36446(-) (ssb) [Acidovorax sp. FHTAMBA]
ATGGCATCAGTCAACAAAGTCATCATCGTCGGCAATCTGGGTCGCGACCCTGAAATGCGCACCTTCCCCAGTGGCGACCA
GGTGGCCAACGTGACGATTGCCACCACCGACAAGTGGAAAGACAAGCAGTCTGGCGAAATGAAGGAAGCCACCGAGTGGC
ACCGTGTGGTCTTCAACGGCCGCCTTGCCGAAATCGCCGGCCAGTATCTGCGCAAGGGCTCGCAGGTGTATGTGGAAGGC
AGCCTGCGCACCCGCAAGTGGACCGACCAGAGCGGCGTGGAGAAGTACAGCACCGAGATTCGCGCCGACCAGATGCAGAT
GCTGGGCAGCCGCCAGGGCATGGGCGGCCAGGGTGGTGGCGGTGGTGGCCAACAGGGCGGCGGCTATGACGATGGCGGCT
ACGGCGGTGGCGAGCAGGGCGGTGGCTACGACCAGGCCCCCCGCCGCGCGGCCCCGGCACCGCGCCCCATGGCAGCCCCC
GCGCAGCGCGCTGCGCCTGCGCCCGTCGCGCAGCCACCCCGCGCGGCTTCGGGGTTTGACGACATGGATGACGACATTCC
ATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.85

100

0.543
  ssb Vibrio cholerae strain A1552

51.546

100

0.532
  ssb Neisseria gonorrhoeae MS11

42.781

99.468

0.426
  ssb Neisseria meningitidis MC58

42.781

99.468

0.426

Multiple sequence alignment