Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ACNR93_RS04255 Genome accession   NZ_CP184736
Coordinates   841941..842621 (+) Length   226 a.a.
NCBI ID   WP_420544002.1    Uniprot ID   -
Organism   Streptococcus equinus strain NM-2-29     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 836941..847621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNR93_RS04235 (ACNR93_04235) - 837940..839403 (+) 1464 WP_420543999.1 glycoside hydrolase family 1 protein -
  ACNR93_RS04240 (ACNR93_04240) - 839458..840078 (+) 621 WP_420544000.1 histidine phosphatase family protein -
  ACNR93_RS04245 (ACNR93_04245) - 840093..840695 (+) 603 WP_420544074.1 histidine phosphatase family protein -
  ACNR93_RS04250 (ACNR93_04250) - 840770..841885 (+) 1116 WP_420544001.1 AI-2E family transporter -
  ACNR93_RS04255 (ACNR93_04255) radC 841941..842621 (+) 681 WP_420544002.1 RadC family protein Machinery gene
  ACNR93_RS04260 (ACNR93_04260) - 842696..843337 (-) 642 WP_004231474.1 redox-sensing transcriptional repressor Rex -
  ACNR93_RS04265 (ACNR93_04265) - 843467..843814 (-) 348 WP_021142204.1 DUF1831 domain-containing protein -
  ACNR93_RS04270 (ACNR93_04270) - 843816..844931 (-) 1116 WP_420544003.1 cysteine desulfurase family protein -
  ACNR93_RS04275 (ACNR93_04275) - 844938..845909 (-) 972 WP_024344165.1 ribose-phosphate diphosphokinase -
  ACNR93_RS04280 (ACNR93_04280) - 845995..846564 (-) 570 WP_420544004.1 CYTH domain-containing protein -
  ACNR93_RS04285 (ACNR93_04285) - 846702..847367 (+) 666 WP_033152508.1 GTP pyrophosphokinase -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 26168.39 Da        Isoelectric Point: 7.4414

>NTDB_id=988894 ACNR93_RS04255 WP_420544002.1 841941..842621(+) (radC) [Streptococcus equinus strain NM-2-29]
MYTIEMKVDAMLPRERLRDLGAEQLSNQELLSILLRTGTKTRPVLEVANDILKHIDSLADFQHLSLQELQKIKGIGHVKS
IEIKAMLELAKRISKAEYVQKERIMSSERLARKMMLELSDQKQEHLVAIYLDTQNRIIEQRTIFIGSVRRSIAEPREILY
YACKNMATSVIIVHNHPSGSPEPSENDLRFTEKIKRSCEDIGLICLDHIIVGKYQYYSFREETDVL

Nucleotide


Download         Length: 681 bp        

>NTDB_id=988894 ACNR93_RS04255 WP_420544002.1 841941..842621(+) (radC) [Streptococcus equinus strain NM-2-29]
ATGTACACAATTGAGATGAAAGTAGATGCCATGCTACCGCGTGAGCGTTTGCGAGATTTAGGAGCAGAGCAACTAAGCAA
TCAGGAATTATTGTCGATTTTATTACGTACAGGCACAAAGACCAGACCTGTTTTGGAAGTGGCAAATGATATTTTAAAAC
ATATTGATAGTTTAGCCGATTTCCAGCATCTATCTTTACAAGAATTGCAAAAAATTAAGGGAATTGGTCACGTGAAGTCC
ATTGAAATTAAAGCGATGCTTGAATTAGCTAAGCGCATTAGCAAAGCAGAGTACGTCCAAAAAGAGCGTATTATGAGCAG
TGAACGTCTAGCTAGAAAGATGATGCTAGAACTTAGTGACCAAAAGCAAGAGCATCTAGTAGCCATTTACCTAGATACGC
AAAATCGCATTATCGAGCAACGTACTATTTTTATTGGTTCAGTTCGTCGCTCAATTGCTGAACCACGTGAAATTTTGTAT
TATGCTTGTAAAAACATGGCAACTTCAGTGATTATCGTTCATAACCACCCTTCTGGTTCGCCAGAACCTAGCGAAAATGA
TTTACGCTTTACTGAAAAAATAAAGCGTTCGTGTGAAGATATTGGACTTATTTGCTTAGATCATATCATAGTAGGCAAAT
ACCAATATTACAGTTTTAGAGAAGAAACGGATGTTTTATAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(106-222)

UPF0758 N-terminal (UPF0758_N)

(13-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus gordonii str. Challis substr. CH1

61.062

100

0.611
  radC Streptococcus pneumoniae TIGR4

57.965

100

0.58
  radC Streptococcus pneumoniae R6

57.522

100

0.575
  radC Streptococcus pneumoniae D39

57.522

100

0.575
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

44.762

92.92

0.416

Multiple sequence alignment