Detailed information NTG0988846

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: AAGQ88_RS23305
• Genome accession: NZ_CP152388
• Coordinates: 5202383..5203723 (+)
• Length: 446 a.a.
• NCBI ID: WP_342653706.1
• Uniprot ID: -
• Organism: Pseudomonas sp. F3-2
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5197383..5208723

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAGQ88_RS23280 (AAGQ88_23280)	pgeF	5197545..5198270 (-)	726	WP_342655874.1	peptidoglycan editing factor PgeF	-
AAGQ88_RS23285 (AAGQ88_23285)	rluD	5198279..5199241 (-)	963	WP_093464666.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
AAGQ88_RS23290 (AAGQ88_23290)	-	5199393..5200415 (+)	1023	WP_093464669.1	outer membrane protein assembly factor BamD	-
AAGQ88_RS23295 (AAGQ88_23295)	-	5200559..5200798 (+)	240	WP_285426241.1	PP0621 family protein	-
AAGQ88_RS23300 (AAGQ88_23300)	pilS	5200788..5202380 (+)	1593	WP_342653705.1	ATP-binding protein	Regulator
AAGQ88_RS23305 (AAGQ88_23305)	pilR	5202383..5203723 (+)	1341	WP_342653706.1	sigma-54 dependent transcriptional regulator	Regulator
AAGQ88_RS23310 (AAGQ88_23310)	-	5203807..5204376 (+)	570	WP_342653707.1	nucleotidyltransferase domain-containing protein	-
AAGQ88_RS23315 (AAGQ88_23315)	-	5204391..5204813 (+)	423	WP_342653708.1	hypothetical protein	-
AAGQ88_RS23320 (AAGQ88_23320)	thiO	5204810..5205913 (-)	1104	WP_342653709.1	glycine oxidase ThiO	-
AAGQ88_RS23325 (AAGQ88_23325)	-	5206103..5206636 (+)	534	WP_342653710.1	GspH/FimT family pseudopilin	-
AAGQ88_RS23330 (AAGQ88_23330)	pilV	5206675..5207193 (+)	519	WP_342653711.1	type IV pilus modification protein PilV	-
AAGQ88_RS23335 (AAGQ88_23335)	-	5207190..5207999 (+)	810	WP_342653712.1	PilW family protein	-
AAGQ88_RS23340 (AAGQ88_23340)	-	5207996..5208571 (+)	576	WP_342653713.1	PilX N-terminal domain-containing pilus assembly protein	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 50041.30 Da
• Isoelectric Point: 6.7746

>NTDB_id=988846 AAGQ88_RS23305 WP_342653706.1 5202383..5203723(+) (pilR) [Pseudomonas sp. F3-2]
MSPRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVKEAQDWLAREAFDLCLTDMRLPDGNGLELVQHIQKRHTQVPVA
MITAHGSVDTAIQALKAGAFDFLTKPVDLGRLRELVSSALRLPKAPSNDTRLDHRLLGNSPPMQALRKQIGKLARSQAPI
YISGESGSGKELVARLIHEQGPRVEQAFVPVNCGAIPTELMESEFFGHRKGSFTGAHEDKPGLFQAASGGTLFLDEVADL
PLAMQVKLLRAIQEKSVRALGEQQEQVIDVRVLCATHKDLSLEVAAGRFRQDLYYRLNVIELRVPPLRERREDIEEIANN
VLRRLADTAGDAPARLPPHALAALKGYRFPGNVRELENMLERAYTLCEDDQINTEDLRLAEPASTQAQPGPNLSDINNLE
DYLESVERKLILQALEETRWNRTAAAQRLNLTFRSMRYRLKKLGLE

Nucleotide

• Length: 1341 bp

>NTDB_id=988846 AAGQ88_RS23305 WP_342653706.1 5202383..5203723(+) (pilR) [Pseudomonas sp. F3-2]
ATGAGCCCACGGCAAAAGATCCTGATCGTCGACGATGAGCCGGACATCCGCGAACTGCTGGAGATCACTCTGGGGCGGAT
GAAACTGGACACGCGCAGCGCCCGCAACGTCAAGGAAGCGCAGGACTGGCTGGCGCGCGAGGCATTCGATCTGTGCCTGA
CGGACATGCGCTTGCCGGACGGCAACGGCCTGGAGCTGGTGCAACACATCCAGAAGCGCCATACACAGGTCCCGGTGGCG
ATGATCACCGCCCACGGCAGCGTCGACACCGCGATTCAGGCGCTCAAGGCTGGTGCCTTCGATTTTCTGACCAAGCCTGT
GGACCTGGGCCGCTTGCGCGAGTTGGTCAGCAGTGCACTGCGCTTGCCCAAGGCACCTTCGAATGACACGCGCCTCGACC
ATCGTCTGCTCGGCAATTCGCCACCGATGCAAGCGCTGCGCAAGCAAATCGGCAAACTGGCGCGCAGTCAGGCACCGATT
TACATCAGCGGCGAGTCTGGCAGCGGCAAGGAGCTGGTCGCGCGTCTCATCCATGAGCAGGGCCCTCGGGTCGAGCAAGC
ATTTGTGCCGGTCAATTGCGGAGCGATCCCGACCGAGCTGATGGAAAGTGAGTTCTTCGGGCACCGCAAAGGCAGCTTCA
CCGGCGCCCACGAAGACAAACCCGGTCTGTTCCAGGCAGCCAGCGGCGGCACGCTGTTTCTTGACGAAGTTGCCGATCTG
CCATTGGCGATGCAGGTAAAACTGCTGCGCGCGATTCAGGAGAAATCCGTCCGCGCCCTGGGCGAGCAACAGGAACAGGT
GATCGACGTTCGCGTCCTCTGCGCCACGCACAAGGACTTGAGTCTGGAGGTGGCGGCCGGTCGCTTCCGGCAGGATTTGT
ACTATCGACTCAACGTGATCGAACTGCGGGTTCCGCCGCTGCGTGAGCGTCGCGAGGACATCGAAGAGATCGCCAACAAC
GTCCTTCGGCGTCTGGCCGACACCGCAGGCGATGCCCCCGCCCGCCTGCCGCCCCATGCACTGGCGGCACTGAAAGGCTA
TCGCTTCCCCGGTAACGTACGCGAGCTGGAAAACATGCTCGAACGCGCTTATACACTCTGCGAAGACGACCAGATCAACA
CCGAAGACCTGCGCCTGGCCGAACCCGCCAGCACCCAGGCCCAGCCCGGCCCGAACCTGTCGGACATCAACAATCTGGAA
GATTACCTCGAAAGCGTCGAGCGCAAACTCATCCTGCAAGCCCTCGAAGAAACCCGCTGGAACCGTACAGCCGCCGCGCA
GCGCCTGAACCTCACGTTCCGATCGATGAGGTATCGCCTGAAGAAGCTTGGTCTCGAGTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (136-302)

• Bacterial regulatory protein, Fis family (HTH_8) (403-443)

• Response regulator receiver domain (Response_reg) (7-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	79.458	99.327	0.789
pilR	Acinetobacter baumannii strain A118	48.802	100	0.502
luxO	Vibrio cholerae strain A1552	37.472	99.327	0.372