Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   AAGQ88_RS23300 Genome accession   NZ_CP152388
Coordinates   5200788..5202380 (+) Length   530 a.a.
NCBI ID   WP_342653705.1    Uniprot ID   -
Organism   Pseudomonas sp. F3-2     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5195788..5207380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAGQ88_RS23280 (AAGQ88_23280) pgeF 5197545..5198270 (-) 726 WP_342655874.1 peptidoglycan editing factor PgeF -
  AAGQ88_RS23285 (AAGQ88_23285) rluD 5198279..5199241 (-) 963 WP_093464666.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AAGQ88_RS23290 (AAGQ88_23290) - 5199393..5200415 (+) 1023 WP_093464669.1 outer membrane protein assembly factor BamD -
  AAGQ88_RS23295 (AAGQ88_23295) - 5200559..5200798 (+) 240 WP_285426241.1 PP0621 family protein -
  AAGQ88_RS23300 (AAGQ88_23300) pilS 5200788..5202380 (+) 1593 WP_342653705.1 ATP-binding protein Regulator
  AAGQ88_RS23305 (AAGQ88_23305) pilR 5202383..5203723 (+) 1341 WP_342653706.1 sigma-54 dependent transcriptional regulator Regulator
  AAGQ88_RS23310 (AAGQ88_23310) - 5203807..5204376 (+) 570 WP_342653707.1 nucleotidyltransferase domain-containing protein -
  AAGQ88_RS23315 (AAGQ88_23315) - 5204391..5204813 (+) 423 WP_342653708.1 hypothetical protein -
  AAGQ88_RS23320 (AAGQ88_23320) thiO 5204810..5205913 (-) 1104 WP_342653709.1 glycine oxidase ThiO -
  AAGQ88_RS23325 (AAGQ88_23325) - 5206103..5206636 (+) 534 WP_342653710.1 GspH/FimT family pseudopilin -
  AAGQ88_RS23330 (AAGQ88_23330) pilV 5206675..5207193 (+) 519 WP_342653711.1 type IV pilus modification protein PilV -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58503.48 Da        Isoelectric Point: 6.6051

>NTDB_id=988845 AAGQ88_RS23300 WP_342653705.1 5200788..5202380(+) (pilS) [Pseudomonas sp. F3-2]
MTAESLSLATPQAQRILRLYHLYRLSIGILLVLLISSSLDAELLELADIELFRTGCWLYLVFNILVVVLLERPSRQGQLF
TLAMTDTLMLAALFYAGGGAPSGIGNLIVASVAISNVLLRRHTGLLIAALSAIGIIYLTFYISYHKPAASNHFVQAGSLG
ALCFAAALLVQTLASRLQVSEDIAERRAADVDNLEELNGLILQRMRTGILVLDSSREVLLANQSALNLLGHERLLGEIID
AYSPQLVERLRQWLINPSMVPRSITTSAIGPVLRPGFVALTRGNHRHTLVFLDDLSQISQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLGESEELSGADQRLSQIIQDQSRRMNLVIENVLQLSRRRQTEPHLLDLKQWLEHYVEELRGSLPAD
QAVHLDISPGTLTTRMDAEQLQQVMTNLVQNGLRYSGQLHQNAQVWLRLFHAPYSELPSLDVMDDGPGVAEEHLTKIFEP
FFTTESKGTGLGLYLSRELCESNQASLNYTPRQGGGSCMRITFAHPFKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=988845 AAGQ88_RS23300 WP_342653705.1 5200788..5202380(+) (pilS) [Pseudomonas sp. F3-2]
GTGACCGCTGAAAGCCTGTCGCTGGCAACCCCGCAAGCCCAGCGCATTCTGCGGCTGTACCACCTCTACCGGCTCAGCAT
CGGCATCCTGCTGGTGCTGCTCATCTCCAGCAGCCTGGACGCCGAACTGCTGGAGCTGGCGGACATCGAGCTGTTCCGCA
CCGGTTGCTGGCTGTATCTGGTGTTCAACATTCTGGTCGTTGTGCTGCTAGAACGGCCCAGCCGTCAGGGCCAGCTGTTC
ACGCTCGCCATGACCGACACGCTGATGCTCGCTGCGCTGTTCTATGCCGGCGGCGGCGCGCCGAGCGGCATCGGTAACCT
CATCGTCGCGTCGGTGGCCATCAGCAACGTGCTGCTTCGCAGGCATACCGGCCTGTTGATCGCTGCGTTGTCGGCGATCG
GCATCATTTACCTGACGTTCTATATCAGCTACCACAAGCCGGCCGCGTCCAATCACTTCGTTCAGGCAGGCTCGCTGGGC
GCATTGTGCTTTGCCGCTGCGCTGCTGGTGCAGACGCTCGCCAGTCGCCTGCAGGTCAGCGAGGACATTGCCGAGCGCCG
CGCCGCCGACGTCGACAATCTGGAAGAGCTCAACGGACTGATCCTTCAGCGCATGCGCACCGGGATTCTGGTGCTGGACT
CCAGCCGCGAAGTGCTGCTCGCCAATCAGAGCGCGTTGAACCTGTTGGGCCACGAGCGTTTGCTGGGCGAAATCATCGAC
GCCTATTCCCCACAACTGGTCGAGCGGCTGCGCCAGTGGCTGATCAACCCATCGATGGTCCCGCGCAGCATTACCACGTC
TGCCATCGGCCCGGTGCTGCGTCCCGGGTTCGTTGCGCTGACCCGTGGCAACCACCGACATACGCTGGTGTTTCTCGACG
ACCTGTCGCAGATTTCCCAGCAGGCTCAGCAACTCAAGCTTGCCGCGCTGGGCAGGCTGACGGCCGGTATCGCCCACGAG
ATCCGCAATCCGCTGGGCGCGATCAGCCATGCGGCGCAGCTGCTGGGCGAATCCGAGGAACTGAGCGGCGCGGACCAACG
TCTCAGTCAAATCATTCAAGATCAATCACGACGGATGAATCTGGTGATCGAGAACGTTCTGCAGTTGTCTCGTCGACGTC
AGACCGAACCTCATCTGCTCGATCTCAAGCAGTGGCTCGAACACTACGTCGAAGAGTTGCGCGGCAGCCTGCCAGCCGAC
CAGGCCGTACACCTGGACATCAGCCCCGGCACGCTGACGACGCGCATGGATGCCGAGCAACTGCAGCAAGTGATGACCAA
TCTGGTGCAGAACGGGTTGCGTTACAGCGGCCAGCTGCATCAGAACGCTCAAGTCTGGCTGCGGCTTTTCCATGCGCCCT
ACAGCGAATTGCCGAGCCTGGATGTGATGGACGACGGCCCCGGCGTCGCCGAAGAGCATCTGACGAAGATCTTCGAGCCC
TTTTTCACCACCGAGAGCAAAGGAACCGGCCTTGGCCTGTACCTTTCGCGCGAGCTGTGCGAAAGCAATCAGGCGAGCCT
GAATTACACACCCCGGCAAGGTGGCGGAAGCTGCATGCGGATCACCTTCGCCCATCCGTTCAAATTGAGTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

PAS domain (PAS_8)

(203-253)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

61.959

100

0.621

Multiple sequence alignment