Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   AAGQ88_RS19190 Genome accession   NZ_CP152388
Coordinates   4244970..4247186 (-) Length   738 a.a.
NCBI ID   WP_342653275.1    Uniprot ID   -
Organism   Pseudomonas sp. F3-2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4239970..4252186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAGQ88_RS19155 (AAGQ88_19155) - 4240087..4240677 (-) 591 WP_342653272.1 nucleotidyltransferase family protein -
  AAGQ88_RS19160 (AAGQ88_19160) murB 4240747..4241766 (-) 1020 WP_342653273.1 UDP-N-acetylmuramate dehydrogenase -
  AAGQ88_RS19165 (AAGQ88_19165) kdsB 4241813..4242577 (-) 765 WP_093469667.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AAGQ88_RS19170 (AAGQ88_19170) - 4242574..4242759 (-) 186 WP_003174668.1 Trm112 family protein -
  AAGQ88_RS19175 (AAGQ88_19175) lpxK 4242777..4243772 (-) 996 WP_342653274.1 tetraacyldisaccharide 4'-kinase -
  AAGQ88_RS19180 (AAGQ88_19180) - 4243772..4244203 (-) 432 WP_093469673.1 biopolymer transporter ExbD -
  AAGQ88_RS19185 (AAGQ88_19185) exbB 4244200..4244874 (-) 675 WP_093469676.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  AAGQ88_RS19190 (AAGQ88_19190) comA 4244970..4247186 (-) 2217 WP_342653275.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AAGQ88_RS19195 (AAGQ88_19195) - 4247340..4247861 (+) 522 WP_342653276.1 DUF2062 domain-containing protein -
  AAGQ88_RS19200 (AAGQ88_19200) - 4248009..4248788 (-) 780 WP_093464120.1 ABC transporter permease -
  AAGQ88_RS19205 (AAGQ88_19205) - 4248785..4249717 (-) 933 WP_093464117.1 ABC transporter ATP-binding protein -
  AAGQ88_RS19210 (AAGQ88_19210) - 4249889..4250512 (-) 624 WP_342653277.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80824.56 Da        Isoelectric Point: 9.2106

>NTDB_id=988835 AAGQ88_RS19190 WP_342653275.1 4244970..4247186(-) (comA) [Pseudomonas sp. F3-2]
MRTGMVALATGLLLLRFLPVLPPVWLLLVMPLVALMLLPFRTYPLAFFLFGLAWACFSARSALHDRLPERYDGQTFWLEG
RVAGLPQTIDGVVRFQLQQPESRRTRLPEQIRLGWYGGPPVNSGERWRLAVKLKRPGGLVNPGAFDYEAWLLSQRIGATG
TVVDGQMLATAQRNWRDGLRQRLLAVDAQGRQGGLAALVLGDDSGLSPADWQVLQDTGTIHLLVISGTHIGLLAGLLYGL
VAGLARWGAWPRRLPWLPCACIVAFGGALAYGFLAGFEVPVQRACVMLGLVLLWRLRFRHLGVTWPLLIALNLVLITEPL
VSLRPGFWLSFAAVGILMLIFGGRLGRWTWLQSWTRAQWLIAVGLLPVLLALNLPVSISGPAVNLLAVPWISLFVLPLAL
LGTLLLALPVFGEPLLWLAGGSMDWLFRFLAVMAEVAPAWSGPQVPGWIWPISLLGALVLLLPEGVPMRLLGWPLLALCV
FPPQQTVPAGEVQVQQLDVGQGLAIVLRTRQHTLLYDAGPRFGEFDIGERVVLPAIRRAGLTRLDVMLLSHADADHAGGA
AAILEGLSVDRVLAGDVGRLPAELQAESCRNGESWTWDEVTFSTWIWENAAPGNQASCVLKVEAKGERLLLTGDIDVDAE
RAMLADGFDARAEWLQSPHHGSRSSSSRAFLRAVGAHSVLISRGRNNAFGHPHPLVMSRYQWSGMRVYDSAESGAITLQL
GARQDASGERQSKRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=988835 AAGQ88_RS19190 WP_342653275.1 4244970..4247186(-) (comA) [Pseudomonas sp. F3-2]
ATGCGCACAGGGATGGTCGCGCTTGCGACGGGATTGCTGCTGTTGCGGTTTCTGCCCGTGCTGCCGCCGGTCTGGTTATT
GCTGGTCATGCCGCTCGTGGCACTGATGCTGCTGCCGTTTCGAACGTATCCGCTGGCCTTCTTTCTGTTCGGCCTCGCCT
GGGCGTGCTTCTCGGCCAGGTCGGCCCTGCACGACCGGTTGCCCGAGCGCTATGACGGCCAGACGTTCTGGCTGGAAGGC
CGAGTCGCCGGTTTGCCGCAAACCATCGACGGTGTCGTGCGTTTTCAGCTGCAGCAGCCCGAATCCCGACGGACCCGGCT
ACCCGAGCAGATCCGGCTGGGCTGGTATGGCGGACCGCCGGTCAACAGTGGCGAGCGTTGGCGGCTGGCGGTCAAGCTCA
AGCGACCGGGCGGTCTGGTCAATCCTGGCGCATTCGATTATGAGGCCTGGCTGCTGTCTCAGCGGATTGGCGCGACCGGC
ACTGTGGTCGACGGGCAGATGCTCGCGACTGCGCAACGCAACTGGCGCGACGGCCTGCGACAGCGTTTGCTCGCAGTTGA
TGCGCAGGGCCGGCAAGGCGGCCTGGCAGCATTGGTGCTGGGCGACGACTCAGGCCTCAGCCCCGCGGACTGGCAGGTGC
TGCAAGACACCGGCACTATCCATCTGCTGGTGATCTCCGGCACGCACATCGGCTTGCTTGCCGGTCTGTTGTACGGGCTG
GTTGCCGGGCTTGCCCGTTGGGGAGCATGGCCACGGCGTCTGCCCTGGTTGCCTTGTGCCTGCATCGTTGCCTTCGGCGG
CGCGCTGGCCTACGGGTTTCTCGCCGGTTTCGAAGTGCCGGTGCAGAGAGCCTGCGTGATGCTCGGACTAGTCCTGCTCT
GGCGGCTGCGCTTTCGCCATCTGGGTGTCACATGGCCCTTGTTGATTGCGCTGAATCTGGTGCTGATCACTGAGCCGTTG
GTCAGCCTCAGGCCAGGATTCTGGCTGTCCTTCGCCGCGGTGGGCATTCTCATGCTGATTTTCGGCGGACGGCTGGGTCG
CTGGACCTGGCTGCAAAGCTGGACCCGGGCGCAGTGGCTGATCGCCGTCGGTCTGCTGCCGGTCCTGCTGGCGCTGAACC
TGCCAGTGAGCATCAGCGGCCCCGCGGTCAATCTGCTGGCCGTGCCGTGGATCAGCCTTTTCGTTCTCCCGCTGGCGTTG
CTCGGGACGCTGTTGCTGGCCCTGCCTGTCTTCGGTGAGCCGCTGCTCTGGCTGGCGGGTGGCTCGATGGACTGGCTGTT
CCGCTTTCTCGCTGTCATGGCTGAAGTCGCCCCGGCGTGGTCCGGCCCGCAGGTGCCCGGCTGGATCTGGCCCATCAGCC
TGCTTGGCGCGCTCGTGTTGTTGCTGCCTGAAGGCGTGCCCATGCGTCTGCTGGGTTGGCCGTTGCTGGCGTTGTGCGTT
TTCCCTCCCCAGCAGACTGTGCCGGCGGGCGAGGTACAGGTGCAGCAGCTGGATGTGGGCCAAGGCTTGGCGATCGTGCT
GCGAACCCGGCAGCACACCTTGCTCTACGATGCCGGGCCGCGCTTCGGCGAATTCGATATCGGTGAGCGAGTGGTGCTCC
CCGCGATCCGGCGCGCCGGGCTCACTCGTCTGGACGTGATGCTGCTCAGCCACGCCGACGCCGATCACGCCGGTGGCGCC
GCGGCGATCCTCGAGGGGCTGTCGGTCGACCGGGTACTGGCAGGCGACGTAGGACGTTTACCTGCCGAGTTGCAGGCCGA
GTCCTGTCGTAACGGCGAAAGCTGGACGTGGGATGAAGTGACTTTTTCCACGTGGATCTGGGAAAACGCGGCGCCAGGCA
ACCAGGCGTCCTGCGTGCTGAAAGTCGAGGCCAAGGGCGAACGGCTGTTGCTGACCGGCGACATCGATGTCGATGCCGAG
CGTGCCATGCTGGCCGATGGGTTCGATGCGCGAGCCGAGTGGCTGCAATCGCCTCATCACGGCAGCCGCAGCTCATCGTC
TCGCGCTTTTCTGCGAGCGGTCGGCGCCCACAGCGTGCTGATATCGCGAGGGCGCAACAATGCCTTCGGCCACCCGCACC
CGCTGGTGATGTCTCGCTATCAGTGGTCCGGCATGCGGGTGTACGACAGTGCCGAATCGGGCGCCATCACGCTGCAGCTG
GGCGCTCGGCAGGACGCAAGCGGGGAGCGCCAGAGCAAGCGCTTCTGGCGCGACTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-675)

Competence protein (Competence)

(198-463)

Domain of unknown function (DUF4131) (DUF4131)

(22-165)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

61.872

97.019

0.6
  comA Ralstonia pseudosolanacearum GMI1000

31.754

100

0.363

Multiple sequence alignment