Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   AAGQ88_RS19185 Genome accession   NZ_CP152388
Coordinates   4244200..4244874 (-) Length   224 a.a.
NCBI ID   WP_093469676.1    Uniprot ID   -
Organism   Pseudomonas sp. F3-2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4239200..4249874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAGQ88_RS19155 (AAGQ88_19155) - 4240087..4240677 (-) 591 WP_342653272.1 nucleotidyltransferase family protein -
  AAGQ88_RS19160 (AAGQ88_19160) murB 4240747..4241766 (-) 1020 WP_342653273.1 UDP-N-acetylmuramate dehydrogenase -
  AAGQ88_RS19165 (AAGQ88_19165) kdsB 4241813..4242577 (-) 765 WP_093469667.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AAGQ88_RS19170 (AAGQ88_19170) - 4242574..4242759 (-) 186 WP_003174668.1 Trm112 family protein -
  AAGQ88_RS19175 (AAGQ88_19175) lpxK 4242777..4243772 (-) 996 WP_342653274.1 tetraacyldisaccharide 4'-kinase -
  AAGQ88_RS19180 (AAGQ88_19180) - 4243772..4244203 (-) 432 WP_093469673.1 biopolymer transporter ExbD -
  AAGQ88_RS19185 (AAGQ88_19185) exbB 4244200..4244874 (-) 675 WP_093469676.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  AAGQ88_RS19190 (AAGQ88_19190) comA 4244970..4247186 (-) 2217 WP_342653275.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AAGQ88_RS19195 (AAGQ88_19195) - 4247340..4247861 (+) 522 WP_342653276.1 DUF2062 domain-containing protein -
  AAGQ88_RS19200 (AAGQ88_19200) - 4248009..4248788 (-) 780 WP_093464120.1 ABC transporter permease -
  AAGQ88_RS19205 (AAGQ88_19205) - 4248785..4249717 (-) 933 WP_093464117.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24253.52 Da        Isoelectric Point: 7.9079

>NTDB_id=988834 AAGQ88_RS19185 WP_093469676.1 4244200..4244874(-) (exbB) [Pseudomonas sp. F3-2]
MWELVKSGGWMMLPIILSSIAAVGIIIERLWTLRASRITPPHLLGQVWRWIQDKQLSGDKLKELRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYLATLGTIAAMAPLLGLLGTVLGMIDIFSSFTSTGMTGNAGMLAGGIAKALICTA
SGLTVAIPTIFFHRYLQNRVDELVVGMEQEAIKLVEVVQGDRDVDLTGAKPDLKAAARGEGRKK

Nucleotide


Download         Length: 675 bp        

>NTDB_id=988834 AAGQ88_RS19185 WP_093469676.1 4244200..4244874(-) (exbB) [Pseudomonas sp. F3-2]
GTGTGGGAGCTGGTCAAATCTGGTGGCTGGATGATGCTACCGATCATTTTGAGTTCCATTGCCGCCGTTGGAATCATCAT
CGAGCGCCTGTGGACACTGCGCGCCAGCCGCATCACACCGCCGCATCTGCTCGGTCAGGTGTGGCGCTGGATTCAAGACA
AACAACTGAGCGGCGACAAGCTCAAAGAACTGCGCGCCGACTCCCCGCTGGGTGAAATCCTCGCCGCTGGCCTGGCCAAC
TCCCGGCATGGCCGCGAGATCATGAAGGAATGCATCGAGGAGGCCGCAGCCCGCGTCATTCACGAGCTGGAGCGCTACCT
TGCGACGCTGGGCACCATCGCGGCAATGGCGCCGCTGCTGGGTCTGCTGGGTACCGTGCTGGGCATGATCGACATTTTCA
GCTCGTTCACCAGCACCGGCATGACCGGCAACGCGGGCATGCTTGCAGGCGGCATCGCCAAGGCACTGATCTGCACGGCC
TCGGGCCTGACCGTGGCGATCCCGACCATCTTTTTCCATCGCTACCTGCAAAACCGCGTCGACGAACTGGTGGTCGGCAT
GGAACAGGAAGCCATCAAACTGGTGGAAGTGGTGCAAGGCGACCGCGATGTCGATCTGACCGGCGCCAAACCTGACCTCA
AGGCCGCCGCGCGTGGCGAGGGCAGGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

80.476

93.75

0.754

Multiple sequence alignment