Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | AAGT77_RS02970 | Genome accession | NZ_CP152380 |
| Coordinates | 639741..640280 (+) | Length | 179 a.a. |
| NCBI ID | WP_058090011.1 | Uniprot ID | A0A142FTP3 |
| Organism | Marinobacter alkaliphilus strain SBY-1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 634741..645280
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAGT77_RS02955 (AAGT77_02955) | rplQ | 634850..635248 (+) | 399 | WP_058090008.1 | 50S ribosomal protein L17 | - |
| AAGT77_RS02960 (AAGT77_02960) | uvrA | 635314..638133 (-) | 2820 | WP_152437265.1 | excinuclease ABC subunit UvrA | - |
| AAGT77_RS02965 (AAGT77_02965) | - | 638314..639684 (+) | 1371 | WP_342631772.1 | MFS transporter | - |
| AAGT77_RS02970 (AAGT77_02970) | ssb | 639741..640280 (+) | 540 | WP_058090011.1 | single-stranded DNA-binding protein | Machinery gene |
| AAGT77_RS02975 (AAGT77_02975) | - | 640493..641416 (+) | 924 | WP_342631773.1 | biogenesis protein MshI | - |
| AAGT77_RS02980 (AAGT77_02980) | - | 641413..642033 (+) | 621 | WP_342631774.1 | PilN domain-containing protein | - |
| AAGT77_RS02985 (AAGT77_02985) | gspM | 642030..642707 (+) | 678 | WP_342631775.1 | type II secretion system protein GspM | - |
| AAGT77_RS02990 (AAGT77_02990) | - | 642709..643038 (+) | 330 | WP_058090092.1 | hypothetical protein | - |
| AAGT77_RS02995 (AAGT77_02995) | mshL | 643035..644753 (+) | 1719 | WP_342631776.1 | pilus (MSHA type) biogenesis protein MshL | - |
Sequence
Protein
Download Length: 179 a.a. Molecular weight: 19761.84 Da Isoelectric Point: 4.9464
>NTDB_id=988758 AAGT77_RS02970 WP_058090011.1 639741..640280(+) (ssb) [Marinobacter alkaliphilus strain SBY-1]
MARGINKVILIGNLGQDPDTRYTPNGNAVVNLNLATDESYKDRQTGQMVPRTEWHRVVLFGKVAEVAGQYLRKGSKVYIE
GRLQTRKWQNKEGQDVYTTEIVVDINGQMQMLDSRGGEGGMNQGAPQGRPQQQPQSQYNAPPQQQGGQAQQPSGGYNPQG
QQSGGMPEPIDDFDDDIPF
MARGINKVILIGNLGQDPDTRYTPNGNAVVNLNLATDESYKDRQTGQMVPRTEWHRVVLFGKVAEVAGQYLRKGSKVYIE
GRLQTRKWQNKEGQDVYTTEIVVDINGQMQMLDSRGGEGGMNQGAPQGRPQQQPQSQYNAPPQQQGGQAQQPSGGYNPQG
QQSGGMPEPIDDFDDDIPF
Nucleotide
Download Length: 540 bp
>NTDB_id=988758 AAGT77_RS02970 WP_058090011.1 639741..640280(+) (ssb) [Marinobacter alkaliphilus strain SBY-1]
ATGGCACGAGGCATTAACAAGGTAATTCTCATTGGTAATCTGGGCCAGGACCCGGATACCCGCTATACCCCGAATGGCAA
CGCGGTTGTGAATCTCAACCTGGCTACCGATGAAAGTTACAAGGATCGCCAGACTGGCCAGATGGTACCGAGAACCGAAT
GGCACCGGGTTGTGCTGTTCGGCAAGGTGGCGGAAGTGGCCGGCCAGTACCTGCGTAAAGGTTCCAAGGTGTATATCGAG
GGTCGCCTGCAAACCCGCAAGTGGCAGAATAAAGAAGGACAGGACGTATACACCACCGAGATTGTGGTAGACATCAACGG
CCAGATGCAGATGCTCGACAGCCGCGGTGGCGAAGGTGGCATGAATCAGGGCGCTCCCCAGGGCCGTCCGCAGCAGCAAC
CCCAATCTCAGTATAATGCTCCCCCCCAGCAGCAGGGTGGCCAGGCTCAGCAGCCGTCCGGGGGTTATAACCCTCAGGGG
CAGCAGAGTGGTGGCATGCCGGAGCCGATTGATGATTTTGATGACGACATTCCCTTCTGA
ATGGCACGAGGCATTAACAAGGTAATTCTCATTGGTAATCTGGGCCAGGACCCGGATACCCGCTATACCCCGAATGGCAA
CGCGGTTGTGAATCTCAACCTGGCTACCGATGAAAGTTACAAGGATCGCCAGACTGGCCAGATGGTACCGAGAACCGAAT
GGCACCGGGTTGTGCTGTTCGGCAAGGTGGCGGAAGTGGCCGGCCAGTACCTGCGTAAAGGTTCCAAGGTGTATATCGAG
GGTCGCCTGCAAACCCGCAAGTGGCAGAATAAAGAAGGACAGGACGTATACACCACCGAGATTGTGGTAGACATCAACGG
CCAGATGCAGATGCTCGACAGCCGCGGTGGCGAAGGTGGCATGAATCAGGGCGCTCCCCAGGGCCGTCCGCAGCAGCAAC
CCCAATCTCAGTATAATGCTCCCCCCCAGCAGCAGGGTGGCCAGGCTCAGCAGCCGTCCGGGGGTTATAACCCTCAGGGG
CAGCAGAGTGGTGGCATGCCGGAGCCGATTGATGATTTTGATGACGACATTCCCTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
54.839 |
100 |
0.57 |
| ssb | Glaesserella parasuis strain SC1401 |
51.872 |
100 |
0.542 |
| ssb | Neisseria meningitidis MC58 |
44.262 |
100 |
0.453 |
| ssb | Neisseria gonorrhoeae MS11 |
44.262 |
100 |
0.453 |