Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V9953_RS07035 Genome accession   NZ_CP152374
Coordinates   1495154..1495693 (-) Length   179 a.a.
NCBI ID   WP_142836750.1    Uniprot ID   -
Organism   Proteus mirabilis strain PM190     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1490154..1500693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9953_RS06985 (V9953_06985) - 1490803..1491987 (+) 1185 WP_250253997.1 integrase arm-type DNA-binding domain-containing protein -
  V9953_RS06990 (V9953_06990) - 1491991..1492197 (-) 207 WP_080047900.1 AlpA family transcriptional regulator -
  V9953_RS06995 (V9953_06995) - 1492410..1493012 (-) 603 WP_250253963.1 MT-A70 family methyltransferase -
  V9953_RS07000 (V9953_07000) - 1492999..1493355 (-) 357 WP_096043071.1 phage protein NinX family protein -
  V9953_RS07005 (V9953_07005) - 1493348..1493515 (-) 168 WP_156868475.1 hypothetical protein -
  V9953_RS07010 (V9953_07010) - 1493663..1494031 (-) 369 WP_063073714.1 hypothetical protein -
  V9953_RS07015 (V9953_07015) - 1494041..1494394 (-) 354 WP_063073715.1 hypothetical protein -
  V9953_RS07020 (V9953_07020) - 1494394..1494681 (-) 288 WP_060558090.1 cyclic-phosphate processing receiver domain-containing protein -
  V9953_RS07025 (V9953_07025) - 1494717..1494935 (-) 219 WP_142836744.1 hypothetical protein -
  V9953_RS07030 (V9953_07030) - 1494977..1495138 (-) 162 WP_153274246.1 hypothetical protein -
  V9953_RS07035 (V9953_07035) ssb 1495154..1495693 (-) 540 WP_142836750.1 single-stranded DNA-binding protein Machinery gene
  V9953_RS07040 (V9953_07040) - 1495683..1496384 (-) 702 WP_096043072.1 lambda exonuclease family protein -
  V9953_RS07045 (V9953_07045) - 1496377..1496997 (-) 621 WP_049206325.1 hypothetical protein -
  V9953_RS07050 (V9953_07050) - 1497037..1497963 (-) 927 WP_063073718.1 RecT family recombinase -
  V9953_RS07055 (V9953_07055) - 1497960..1498181 (-) 222 WP_049199148.1 hypothetical protein -
  V9953_RS07060 (V9953_07060) - 1498178..1498375 (-) 198 WP_232339726.1 hypothetical protein -
  V9953_RS07065 (V9953_07065) - 1498440..1498595 (-) 156 WP_183129929.1 hypothetical protein -
  V9953_RS07070 (V9953_07070) - 1498667..1498900 (-) 234 WP_063073721.1 hypothetical protein -
  V9953_RS07075 (V9953_07075) - 1498935..1499207 (-) 273 WP_071233776.1 hypothetical protein -
  V9953_RS07080 (V9953_07080) - 1499376..1499657 (+) 282 WP_071233777.1 hypothetical protein -
  V9953_RS07085 (V9953_07085) - 1499629..1499865 (-) 237 WP_049220845.1 hypothetical protein -
  V9953_RS07090 (V9953_07090) - 1499876..1500169 (-) 294 WP_250253965.1 hypothetical protein -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19733.11 Da        Isoelectric Point: 7.2415

>NTDB_id=988722 V9953_RS07035 WP_142836750.1 1495154..1495693(-) (ssb) [Proteus mirabilis strain PM190]
MASKGVNKCILIGHLGQDPEIRYMPSGGAVANLTLATSESWRDKQTGEMKDRVEWHRVCIFGKLAEIAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEVVVNIGGTMQMLGGNGGNQAGSQKPQQNQGWGQPQQPQAPKQASSNQTPQSEPPQDWDD
PIPFAPIGLPYPRHAIYVI

Nucleotide


Download         Length: 540 bp        

>NTDB_id=988722 V9953_RS07035 WP_142836750.1 1495154..1495693(-) (ssb) [Proteus mirabilis strain PM190]
ATGGCAAGTAAAGGCGTGAATAAATGTATTCTCATTGGTCACTTGGGGCAGGATCCAGAAATCCGTTATATGCCATCAGG
TGGCGCAGTCGCTAATCTCACACTAGCCACATCGGAATCGTGGCGTGATAAGCAGACTGGTGAAATGAAGGATCGGGTTG
AGTGGCATCGAGTGTGCATCTTCGGAAAATTAGCCGAAATTGCAGGTGAATATCTGAGAAAAGGAAGTCAGGTATATATC
GAGGGCTCACTGCAAACCAGAAAATGGCAAGACCAAAGCGGTCAAGACCGATACACAACGGAAGTAGTGGTCAATATTGG
TGGAACAATGCAGATGCTAGGCGGTAACGGTGGTAATCAGGCAGGAAGCCAGAAGCCACAGCAAAACCAAGGATGGGGTC
AGCCTCAGCAACCGCAAGCGCCAAAACAAGCATCGAGTAATCAAACACCACAAAGTGAGCCACCTCAAGATTGGGATGAT
CCTATACCTTTCGCCCCTATCGGACTCCCCTACCCACGACACGCTATTTATGTGATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

66.667

98.883

0.659
  ssb Glaesserella parasuis strain SC1401

50.829

100

0.514
  ssb Neisseria meningitidis MC58

43.182

98.324

0.425
  ssb Neisseria gonorrhoeae MS11

42.614

98.324

0.419

Multiple sequence alignment