Detailed information NTG0988545

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: AAG685_RS25205
• Genome accession: NZ_CP152345
• Coordinates: 5495347..5496492 (-)
• Length: 381 a.a.
• NCBI ID: WP_406665690.1
• Uniprot ID: -
• Organism: Pseudomonas indoloxydans strain SDU_PSEU1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5490347..5501492

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAG685_RS25185	ntrC	5491159..5492592 (+)	1434	WP_004373752.1	nitrogen regulation protein NR(I)	-
AAG685_RS25190	-	5492740..5493138 (-)	399	WP_406665684.1	NINE protein	-
AAG685_RS25195	-	5493286..5494497 (+)	1212	WP_406665686.1	putative DNA modification/repair radical SAM protein	-
AAG685_RS25200	-	5494497..5495381 (+)	885	WP_406665688.1	TIGR03915 family putative DNA repair protein	-
AAG685_RS25205	pilU	5495347..5496492 (-)	1146	WP_406665690.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
AAG685_RS25210	-	5496730..5497761 (-)	1032	Protein_4963	type IV pilus twitching motility protein PilT	-
AAG685_RS25215	-	5497978..5498670 (+)	693	WP_406665692.1	YggS family pyridoxal phosphate-dependent enzyme	-
AAG685_RS25220	proC	5498689..5499507 (+)	819	WP_406665694.1	pyrroline-5-carboxylate reductase	-
AAG685_RS25225	-	5499517..5500110 (+)	594	WP_406665696.1	YggT family protein	-
AAG685_RS25230	-	5500113..5500403 (+)	291	WP_406665698.1	DUF167 domain-containing protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 42492.77 Da
• Isoelectric Point: 6.5931

>NTDB_id=988545 AAG685_RS25205 WP_406665690.1 5495347..5496492(-) (pilU) [Pseudomonas indoloxydans strain SDU_PSEU1]
MEFEKLLRLMVEKGGSDLFITAGVPPSMKVNGKIMPVTKNAMSPEQTRETVLGVMNEAQRRDFAENHECNFAISARGIGR
FRVSAFYQRNLVGMVLRRIETTIPTLDELKLPDILKKLSLTKRGLVLFVGATGTGKSTSLAAMIGYRNRNSSGHIISIED
PIEYIHQHQSCIVTQREVGIDTESFEVALKNTLRQAPDVIMIGEVRTRETMDHAVAFAETGHLCLATLHANNANQALDRI
INFFPPDRQNQVWMDLSLNLKAIVAQQLVPTPDGKGRRAVIEVLINTPLAADLIRKGEVHELKGLMKRSNEQGMQTFDQA
LYNLYTQGEITYEDALLYADSANDLRLMIKLGSETDGDHLTSMAQGLALEVSEEDPGRRFR

Nucleotide

• Length: 1146 bp

>NTDB_id=988545 AAG685_RS25205 WP_406665690.1 5495347..5496492(-) (pilU) [Pseudomonas indoloxydans strain SDU_PSEU1]
ATGGAATTCGAAAAACTACTGCGCCTGATGGTCGAAAAGGGCGGTTCCGATCTGTTCATCACCGCGGGTGTGCCGCCTTC
GATGAAGGTCAATGGCAAGATCATGCCGGTGACCAAGAATGCCATGTCGCCGGAGCAGACTCGCGAGACCGTTCTGGGCG
TGATGAACGAAGCGCAGCGCCGTGACTTCGCCGAGAATCACGAGTGCAACTTTGCCATCAGTGCGCGCGGCATCGGGCGT
TTCCGCGTCAGTGCCTTCTATCAGCGCAACCTGGTAGGTATGGTGCTGCGCCGCATCGAGACCACCATTCCCACCCTCGA
TGAGCTCAAGTTGCCGGATATCCTCAAGAAGCTGTCGCTGACCAAGCGCGGCCTGGTGCTGTTCGTCGGCGCCACCGGCA
CCGGCAAGTCGACCTCGCTGGCGGCGATGATCGGCTACCGCAACCGCAACAGCAGCGGCCACATCATCTCCATCGAAGAC
CCGATCGAGTACATCCACCAGCACCAGAGCTGCATCGTCACGCAACGTGAGGTGGGCATCGATACCGAGTCCTTCGAGGT
GGCGCTGAAGAACACCCTGCGCCAGGCGCCGGACGTGATCATGATCGGCGAGGTGCGCACCCGCGAGACCATGGATCATG
CCGTGGCCTTCGCCGAAACCGGTCACCTGTGCCTGGCCACCCTGCACGCCAACAACGCCAACCAGGCATTGGATCGCATC
ATCAACTTCTTCCCGCCCGACCGGCAGAATCAGGTGTGGATGGATCTGTCGCTCAACCTCAAGGCCATCGTCGCTCAGCA
ACTGGTGCCGACCCCGGATGGCAAGGGCCGCCGCGCGGTGATCGAGGTGTTGATCAACACCCCGCTGGCTGCCGACCTGA
TCCGCAAGGGTGAGGTGCACGAGCTCAAGGGCCTGATGAAGCGCTCCAACGAGCAGGGCATGCAGACCTTCGACCAGGCG
CTGTACAACCTCTACACCCAGGGCGAGATCACCTACGAAGACGCGTTGCTCTATGCCGACTCGGCCAACGACCTGCGCCT
GATGATCAAGCTCGGTTCGGAAACCGATGGCGACCATCTGACCAGCATGGCCCAAGGGCTGGCGCTGGAGGTCAGCGAGG
AAGATCCGGGGCGTCGCTTCCGCTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (113-270)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	90.551	100	0.906
pilU	Acinetobacter baylyi ADP1	63.025	93.701	0.591
pilU	Vibrio cholerae strain A1552	58.286	91.864	0.535
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	43.155	88.189	0.381