Detailed information NTG0988529

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: AAG685_RS10235
• Genome accession: NZ_CP152345
• Coordinates: 2254433..2256664 (+)
• Length: 743 a.a.
• NCBI ID: WP_406668893.1
• Uniprot ID: -
• Organism: Pseudomonas indoloxydans strain SDU_PSEU1
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2249433..2261664

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAG685_RS10210	-	2250125..2250433 (-)	309	WP_406668889.1	phosphodiesterase	-
AAG685_RS10215	-	2250455..2251021 (-)	567	WP_406668890.1	PilZ domain-containing protein	-
AAG685_RS10220	-	2251162..2252409 (+)	1248	WP_406668891.1	lipoprotein-releasing ABC transporter permease subunit	-
AAG685_RS10225	lolD	2252414..2253115 (+)	702	WP_406668892.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
AAG685_RS10230	-	2253115..2254357 (+)	1243	Protein_2025	lipoprotein-releasing ABC transporter permease subunit	-
AAG685_RS10235	comA	2254433..2256664 (+)	2232	WP_406668893.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
AAG685_RS10240	exbB	2256735..2257418 (+)	684	WP_406668894.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
AAG685_RS10245	-	2257415..2257843 (+)	429	WP_406668895.1	ExbD/TolR family protein	-
AAG685_RS10250	lpxK	2257844..2258848 (+)	1005	WP_406668896.1	tetraacyldisaccharide 4'-kinase	-
AAG685_RS10255	-	2258868..2259053 (+)	186	WP_013714804.1	Trm112 family protein	-
AAG685_RS10260	kdsB	2259054..2259818 (+)	765	WP_406668897.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
AAG685_RS10265	-	2259818..2260282 (+)	465	WP_406668898.1	low molecular weight protein-tyrosine-phosphatase	-
AAG685_RS10270	murB	2260279..2261297 (+)	1019	Protein_2033	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 80501.57 Da
• Isoelectric Point: 10.3005

>NTDB_id=988529 AAG685_RS10235 WP_406668893.1 2254433..2256664(+) (comA) [Pseudomonas indoloxydans strain SDU_PSEU1]
MRAGMLALALGLLSLRFLPALPPGWLLLLCAALGLVLLASRLYLIGFFALGLAWACTSAQWALDDRLSAVLDGRTLWLEG
QVVGLPAVADGTVRFQLEDAVSRRARLPQLMRLSWRGGPPIRGGERWRLAVNLRQPHGLVNPQAFDHEAWLLAQRIGATG
TVKAGERVSEAGGFTAWRDQVRQQVLQVEAYGRAGGIAALVLGDGSGLSSADWRLLQHTGTVHLMVISGQHVTMLAGILY
GLVAGLARLGLWPRRWPWLPCACALALLGALAYGLMAGFEVPVRRACVMVALVLLWRLRFRHLGAWWPLLLALVVVLLAE
PLAVLQPGFWLSFVAVAVLILVFGGRLGSWGALSSLGRAQWTMAFGLLPAMLALGLPVSVSGPLANLIAVPWVGVLVVPV
SLLGTLLLPLPWVGEWLLTLAGGMLALLFVVLEHIASWLPAWLPSDVPGWALALAVLGAVLLLLPTGVPLRLPGLFLLLP
ALLVQGKPLPYGLAQVWVFDVGQGLSVLVRTREHALLYDAGPSFGGFDTGERVILPSLRALDVRRLDLLLISHADNDHAG
GAGAIVQGLPVERLVSGEEERLARKSRKLKVEPCTTGHWHWDGVEFQQWRWEDAGPGNASSCVLRVTARGESLLLTGDID
RDAERALLRSELPARADWLLVPHHGSRSSSSPGFLNAVSPRGGLLSRGRHNSFGHPHAQVVARYHARQAQLHDTAEQGAL
MLWLGRHGDVIGLRDERRFWREK

Nucleotide

• Length: 2232 bp

>NTDB_id=988529 AAG685_RS10235 WP_406668893.1 2254433..2256664(+) (comA) [Pseudomonas indoloxydans strain SDU_PSEU1]
ATGCGCGCAGGGATGCTGGCGCTGGCCTTGGGCCTCTTGTCGCTTCGATTTCTTCCGGCGCTGCCTCCGGGCTGGCTGTT
GCTTCTTTGCGCAGCGCTGGGCCTGGTGCTTCTGGCATCGCGCCTGTATCTCATCGGCTTCTTCGCGTTGGGGCTGGCTT
GGGCCTGCACCTCGGCGCAGTGGGCACTGGATGATCGCCTGTCCGCCGTGCTCGATGGTCGTACCTTGTGGCTGGAGGGC
CAGGTGGTCGGCCTGCCGGCGGTTGCCGACGGCACAGTGCGCTTTCAGCTCGAAGATGCCGTATCGCGTCGCGCCAGGCT
CCCGCAACTGATGCGCCTTTCCTGGCGCGGCGGGCCGCCGATCCGTGGCGGCGAGCGCTGGCGTCTGGCCGTCAACCTGC
GTCAGCCACATGGCCTGGTGAACCCACAGGCGTTCGACCACGAGGCCTGGTTGCTGGCGCAGCGCATTGGCGCCACCGGT
ACGGTCAAGGCGGGTGAGCGTGTGAGCGAGGCCGGTGGTTTCACGGCCTGGCGCGACCAGGTTCGTCAGCAGGTACTGCA
AGTCGAGGCCTACGGTCGTGCCGGCGGCATAGCCGCGCTGGTACTCGGCGACGGCTCGGGCCTGAGCAGCGCCGACTGGC
GCCTGTTGCAGCACACCGGAACGGTGCATCTGATGGTCATCTCCGGCCAGCACGTCACCATGCTCGCCGGGATTCTCTAT
GGTCTTGTGGCGGGGCTTGCTCGCCTGGGGCTTTGGCCGCGCCGCTGGCCCTGGTTGCCCTGTGCCTGCGCTCTGGCGTT
GCTCGGTGCTCTGGCTTACGGATTGATGGCCGGCTTCGAAGTGCCAGTGCGACGAGCCTGCGTGATGGTCGCCCTGGTGC
TGCTGTGGCGCCTGCGCTTTCGCCACCTGGGGGCGTGGTGGCCATTGCTGCTGGCGTTGGTGGTGGTGCTGCTGGCTGAG
CCCCTGGCGGTGCTGCAACCAGGATTCTGGTTGTCGTTTGTCGCCGTTGCCGTGCTGATTCTGGTCTTTGGCGGGCGTCT
GGGTAGTTGGGGAGCTCTGAGCAGTCTGGGGCGTGCGCAATGGACCATGGCGTTCGGCCTGCTTCCGGCGATGCTGGCGC
TGGGCCTGCCAGTCAGCGTCAGTGGGCCGCTGGCCAATCTGATCGCGGTGCCCTGGGTCGGTGTGCTGGTGGTGCCGGTG
TCCCTGCTGGGGACTCTGCTGCTGCCCCTCCCCTGGGTAGGAGAATGGCTGCTGACCCTGGCCGGCGGCATGCTCGCACT
CCTGTTCGTCGTGCTCGAGCATATTGCCTCCTGGTTGCCAGCCTGGCTGCCGTCTGACGTACCCGGATGGGCTCTGGCGT
TGGCCGTGCTGGGAGCAGTGCTACTGCTGTTGCCGACCGGCGTGCCGTTGCGCCTGCCGGGTTTGTTCCTGCTGCTGCCG
GCCCTGCTGGTACAGGGCAAGCCTCTGCCGTACGGGCTGGCCCAGGTATGGGTCTTCGACGTTGGCCAGGGCTTGTCGGT
GCTGGTGCGCACCCGCGAGCATGCGCTGCTTTACGATGCCGGGCCGAGCTTCGGAGGCTTCGACACGGGCGAGCGGGTGA
TCCTGCCGTCGCTGCGTGCGCTCGACGTGCGGCGGCTCGACCTGCTGTTGATCAGCCATGCCGACAACGACCATGCTGGC
GGTGCTGGCGCCATTGTCCAGGGCCTGCCGGTCGAGCGGCTGGTCAGTGGCGAGGAGGAGCGCCTGGCGCGCAAGTCACG
CAAGCTCAAGGTCGAGCCCTGCACCACAGGGCACTGGCACTGGGATGGTGTCGAATTCCAGCAATGGCGCTGGGAGGACG
CCGGGCCTGGCAATGCCAGCTCCTGCGTGCTGCGGGTAACCGCCAGAGGAGAAAGCCTGCTGCTGACCGGCGACATCGAC
AGGGACGCCGAGCGGGCCCTGCTGCGTAGCGAGTTGCCTGCTCGGGCCGACTGGTTGCTGGTGCCGCACCATGGCAGTCG
CAGCTCCTCCAGCCCCGGCTTTCTCAACGCCGTCTCGCCACGGGGCGGGCTGTTGTCACGTGGGCGGCACAACAGTTTCG
GTCATCCCCATGCCCAGGTCGTGGCACGCTATCACGCGCGCCAGGCGCAACTGCACGACACCGCCGAGCAGGGTGCCCTG
ATGCTGTGGCTGGGCCGTCATGGCGACGTCATCGGCTTGCGTGACGAAAGGCGTTTCTGGCGGGAAAAATGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (200-465)

• Metallo-beta-lactamase superfamily (Lactamase_B) (501-669)

• Domain of unknown function (DUF4131) (DUF4131) (23-167)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.078	97.039	0.622
comA	Ralstonia pseudosolanacearum GMI1000	35.629	100	0.404