Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   AAG685_RS10240 Genome accession   NZ_CP152345
Coordinates   2256735..2257418 (+) Length   227 a.a.
NCBI ID   WP_406668894.1    Uniprot ID   -
Organism   Pseudomonas indoloxydans strain SDU_PSEU1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2251735..2262418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAG685_RS10225 lolD 2252414..2253115 (+) 702 WP_406668892.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  AAG685_RS10230 - 2253115..2254357 (+) 1243 Protein_2025 lipoprotein-releasing ABC transporter permease subunit -
  AAG685_RS10235 comA 2254433..2256664 (+) 2232 WP_406668893.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AAG685_RS10240 exbB 2256735..2257418 (+) 684 WP_406668894.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  AAG685_RS10245 - 2257415..2257843 (+) 429 WP_406668895.1 ExbD/TolR family protein -
  AAG685_RS10250 lpxK 2257844..2258848 (+) 1005 WP_406668896.1 tetraacyldisaccharide 4'-kinase -
  AAG685_RS10255 - 2258868..2259053 (+) 186 WP_013714804.1 Trm112 family protein -
  AAG685_RS10260 kdsB 2259054..2259818 (+) 765 WP_406668897.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AAG685_RS10265 - 2259818..2260282 (+) 465 WP_406668898.1 low molecular weight protein-tyrosine-phosphatase -
  AAG685_RS10270 murB 2260279..2261297 (+) 1019 Protein_2033 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24449.80 Da        Isoelectric Point: 9.1674

>NTDB_id=988530 AAG685_RS10240 WP_406668894.1 2256735..2257418(+) (exbB) [Pseudomonas indoloxydans strain SDU_PSEU1]
MWELVKSGGWVMLPIILCSIAAAGIIAERLWTLRPSRVAPANLLAQVWQWIKDKQLNNQKLKELRGHSPLGQVLAAGLAN
SKHGREIMKECIEEAAARVIHDLERYLNALGTIAGIAPLLGLLGTVLAMIDIFGAFMGSTSGANTQMLAGGIAKALITTA
TGLIVAIPALFFHRFLTRRVDELVVGMEQEAIKLVEMLQGDREVDLGDAPAAATAVEKPSRKEGRKA

Nucleotide


Download         Length: 684 bp        

>NTDB_id=988530 AAG685_RS10240 WP_406668894.1 2256735..2257418(+) (exbB) [Pseudomonas indoloxydans strain SDU_PSEU1]
GTGTGGGAACTGGTCAAGTCTGGCGGCTGGGTGATGCTGCCGATCATTCTCTGCTCCATCGCTGCTGCCGGCATCATCGC
CGAGCGCCTGTGGACGCTGCGCCCTTCTCGCGTTGCGCCGGCCAATCTGCTGGCCCAGGTGTGGCAGTGGATCAAGGACA
AGCAACTGAACAACCAGAAGCTCAAGGAGCTGCGTGGTCATTCGCCGCTTGGCCAGGTGCTCGCTGCCGGCCTCGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAGGAGGCCGCCGCACGGGTCATTCACGATCTCGAACGTTACCT
CAATGCCCTTGGCACCATTGCCGGCATCGCCCCGTTGCTGGGCCTGCTCGGCACCGTGCTGGCGATGATCGATATCTTCG
GCGCCTTCATGGGCTCGACCAGCGGTGCCAACACCCAGATGCTCGCCGGCGGTATTGCCAAGGCACTGATCACCACCGCG
ACCGGCCTGATCGTGGCGATTCCGGCACTGTTCTTCCACCGTTTCCTGACGCGTCGCGTCGATGAACTGGTGGTCGGTAT
GGAGCAGGAAGCGATCAAACTGGTGGAAATGCTCCAGGGTGACCGCGAGGTCGATCTGGGCGATGCCCCGGCCGCTGCAA
CTGCCGTCGAGAAACCGAGCCGCAAGGAAGGACGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

92.952

0.771

Multiple sequence alignment