Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AAG689_RS22970 Genome accession   NZ_CP152342
Coordinates   4716049..4716591 (-) Length   180 a.a.
NCBI ID   WP_406623938.1    Uniprot ID   -
Organism   Acidovorax sp. SDU_ACID1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4711049..4721591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAG689_RS22960 - 4712854..4713900 (+) 1047 WP_406626392.1 cellulose synthase subunit BcsC-related outer membrane protein -
  AAG689_RS22965 - 4714219..4715901 (-) 1683 WP_406623937.1 hypothetical protein -
  AAG689_RS22970 ssb 4716049..4716591 (-) 543 WP_406623938.1 single-stranded DNA-binding protein Machinery gene
  AAG689_RS22975 - 4716669..4717846 (-) 1178 Protein_4535 MFS transporter -
  AAG689_RS22980 - 4717980..4721132 (-) 3153 WP_406623939.1 beta strand repeat-containing protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19143.11 Da        Isoelectric Point: 5.9554

>NTDB_id=988501 AAG689_RS22970 WP_406623938.1 4716049..4716591(-) (ssb) [Acidovorax sp. SDU_ACID1]
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVRIATTDRWRDKNTGENKEATEWHSVVFNGRLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQSGQERYTTEIRADTMQMLGSRGGAGGGAGGGYDDGGYGGGGDGGGYEAPRRAAPAPRPAAPPATRPAPAP
MAQPPRAASGFDDMDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=988501 AAG689_RS22970 WP_406623938.1 4716049..4716591(-) (ssb) [Acidovorax sp. SDU_ACID1]
ATGGCATCCGTCAACAAAGTCATCATCGTCGGCAACCTGGGCCGCGATCCCGAAATGCGCACCTTCCCGAGCGGCGACCA
GGTGGCCAACGTGCGGATCGCCACCACCGACCGCTGGCGCGACAAGAATACCGGCGAGAACAAGGAAGCCACCGAGTGGC
ACAGCGTGGTCTTCAACGGCCGCCTGGCCGAGATCGTGGGCCAGTACTTGCGCAAGGGCTCGCAGGTCTATGTGGAAGGC
AGCCTGCGCACCCGCAAGTGGACCGACCAGAGCGGCCAGGAGCGCTACACCACCGAAATCCGCGCCGACACCATGCAGAT
GCTGGGCAGCCGCGGCGGTGCGGGCGGCGGTGCGGGTGGAGGCTATGACGACGGCGGCTACGGCGGCGGTGGAGACGGCG
GCGGCTACGAGGCCCCGCGCCGCGCCGCGCCTGCGCCGCGCCCCGCAGCGCCCCCGGCAACCCGCCCCGCGCCGGCCCCG
ATGGCCCAGCCGCCGCGCGCGGCGTCGGGTTTCGACGACATGGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.356

100

0.556
  ssb Vibrio cholerae strain A1552

50

100

0.517
  ssb Neisseria gonorrhoeae MS11

46.369

99.444

0.461
  ssb Neisseria meningitidis MC58

45.251

99.444

0.45

Multiple sequence alignment