Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AAG563_RS19910 Genome accession   NZ_CP152341
Coordinates   4438875..4439387 (-) Length   170 a.a.
NCBI ID   WP_009045846.1    Uniprot ID   A0AB33WX86
Organism   Pseudomonas chlororaphis strain NCIMB_15121     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4433875..4444387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAG563_RS19885 (AAG563_19885) - 4433962..4434957 (+) 996 WP_009045841.1 lysylphosphatidylglycerol synthase domain-containing protein -
  AAG563_RS19890 (AAG563_19890) - 4435033..4435788 (-) 756 WP_009045842.1 alpha/beta fold hydrolase -
  AAG563_RS19895 (AAG563_19895) - 4435778..4436887 (-) 1110 WP_009045843.1 DUF3182 family protein -
  AAG563_RS19900 (AAG563_19900) - 4437070..4438077 (-) 1008 WP_009045844.1 GlxA family transcriptional regulator -
  AAG563_RS19905 (AAG563_19905) - 4438181..4438735 (+) 555 WP_009045845.1 cysteine hydrolase family protein -
  AAG563_RS19910 (AAG563_19910) ssb 4438875..4439387 (-) 513 WP_009045846.1 single-stranded DNA-binding protein Machinery gene
  AAG563_RS19915 (AAG563_19915) - 4439397..4440791 (-) 1395 WP_009045847.1 MFS transporter -
  AAG563_RS19920 (AAG563_19920) uvrA 4440972..4443806 (+) 2835 WP_007924172.1 excinuclease ABC subunit UvrA -
  AAG563_RS19925 (AAG563_19925) bfr 4443898..4444362 (-) 465 WP_007924173.1 bacterioferritin -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18934.07 Da        Isoelectric Point: 5.9455

>NTDB_id=988471 AAG563_RS19910 WP_009045846.1 4438875..4439387(-) (ssb) [Pseudomonas chlororaphis strain NCIMB_15121]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQGDQGQGMGNSAPRPQQSRPQPSQAPQRESRPAPQQSSPQPAQNF
DDSFDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=988471 AAG563_RS19910 WP_009045846.1 4438875..4439387(-) (ssb) [Pseudomonas chlororaphis strain NCIMB_15121]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCTGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAATGGACCGACAAGCAGACCGGCCAGAAGGTCGAGAAGACCGAGT
GGCACCGGGTATCGATGTTCGGCAAGGTCGCGGAAATCGCCGGCGAGTACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTGGGCGGCCGTCCTCAGGGCGACCAGGGCCAGGGCATGGGCAACTCCGCGCCACGTCCGCAGCAGTCGC
GTCCACAGCCTTCGCAGGCGCCACAACGCGAATCGCGTCCAGCGCCTCAGCAGTCCTCGCCACAGCCGGCGCAAAACTTC
GACGACAGCTTCGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.427

100

0.612
  ssb Glaesserella parasuis strain SC1401

46.392

100

0.529
  ssb Neisseria meningitidis MC58

48.864

100

0.506
  ssb Neisseria gonorrhoeae MS11

48.295

100

0.5

Multiple sequence alignment