Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | AAG562_RS20810 | Genome accession | NZ_CP152340 |
| Coordinates | 4484320..4484811 (-) | Length | 163 a.a. |
| NCBI ID | WP_003281797.1 | Uniprot ID | A0A210XTT8 |
| Organism | Stutzerimonas stutzeri strain NCIMB_885 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 4479320..4489811
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAG562_RS20785 (AAG562_20785) | - | 4479429..4480775 (-) | 1347 | WP_003281789.1 | MotA/TolQ/ExbB proton channel family protein | - |
| AAG562_RS20790 (AAG562_20790) | - | 4480772..4481557 (-) | 786 | WP_003281791.1 | DUF3450 domain-containing protein | - |
| AAG562_RS20795 (AAG562_20795) | - | 4481742..4482428 (+) | 687 | WP_003281793.1 | OmpW family outer membrane protein | - |
| AAG562_RS20800 (AAG562_20800) | - | 4482503..4483432 (-) | 930 | WP_003281795.1 | NAD-dependent epimerase/dehydratase family protein | - |
| AAG562_RS20805 (AAG562_20805) | - | 4483425..4484309 (-) | 885 | WP_003281796.1 | sugar nucleotide-binding protein | - |
| AAG562_RS20810 (AAG562_20810) | ssb | 4484320..4484811 (-) | 492 | WP_003281797.1 | single-stranded DNA-binding protein | Machinery gene |
| AAG562_RS20815 (AAG562_20815) | - | 4484979..4486346 (-) | 1368 | WP_003281798.1 | MFS transporter | - |
| AAG562_RS20820 (AAG562_20820) | uvrA | 4486478..4489321 (+) | 2844 | WP_003281800.1 | excinuclease ABC subunit UvrA | - |
Sequence
Protein
Download Length: 163 a.a. Molecular weight: 18314.38 Da Isoelectric Point: 5.9492
>NTDB_id=988456 AAG562_RS20810 WP_003281797.1 4484320..4484811(-) (ssb) [Stutzerimonas stutzeri strain NCIMB_885]
MARGVNKVILIGNVGGDPETRYMPNGNAVTNITLATTDSWKDKQTGQLQERTEWHRVVLFGKVAEIAGEYLRKGSQCYIE
GRLQTREWEKDGVKRYTTEIVVDMNGTMQLLGGRGGSSDDAPRQPRPQREPQQAPRQQAQPQQPAARQQPAPDYDSFDDD
IPF
MARGVNKVILIGNVGGDPETRYMPNGNAVTNITLATTDSWKDKQTGQLQERTEWHRVVLFGKVAEIAGEYLRKGSQCYIE
GRLQTREWEKDGVKRYTTEIVVDMNGTMQLLGGRGGSSDDAPRQPRPQREPQQAPRQQAQPQQPAARQQPAPDYDSFDDD
IPF
Nucleotide
Download Length: 492 bp
>NTDB_id=988456 AAG562_RS20810 WP_003281797.1 4484320..4484811(-) (ssb) [Stutzerimonas stutzeri strain NCIMB_885]
ATGGCCAGAGGGGTAAACAAAGTCATCTTGATCGGCAATGTCGGCGGCGACCCGGAAACCCGCTACATGCCCAATGGCAA
TGCGGTGACCAACATCACGCTGGCAACCACCGACAGCTGGAAGGACAAGCAGACCGGTCAGCTTCAGGAGCGCACCGAGT
GGCACCGTGTGGTGCTGTTCGGCAAGGTCGCCGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCGCAGTGCTACATCGAA
GGCCGCCTGCAGACTCGCGAGTGGGAGAAGGATGGCGTCAAGCGCTACACCACCGAAATCGTCGTCGACATGAATGGTAC
CATGCAGCTGCTCGGCGGCCGTGGCGGCAGTTCCGATGACGCGCCACGTCAGCCGCGCCCGCAGCGCGAGCCGCAACAGG
CTCCGCGTCAGCAGGCTCAGCCGCAGCAGCCGGCCGCACGGCAGCAGCCGGCGCCGGACTATGACAGCTTCGATGACGAC
ATCCCCTTCTAG
ATGGCCAGAGGGGTAAACAAAGTCATCTTGATCGGCAATGTCGGCGGCGACCCGGAAACCCGCTACATGCCCAATGGCAA
TGCGGTGACCAACATCACGCTGGCAACCACCGACAGCTGGAAGGACAAGCAGACCGGTCAGCTTCAGGAGCGCACCGAGT
GGCACCGTGTGGTGCTGTTCGGCAAGGTCGCCGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCGCAGTGCTACATCGAA
GGCCGCCTGCAGACTCGCGAGTGGGAGAAGGATGGCGTCAAGCGCTACACCACCGAAATCGTCGTCGACATGAATGGTAC
CATGCAGCTGCTCGGCGGCCGTGGCGGCAGTTCCGATGACGCGCCACGTCAGCCGCGCCCGCAGCGCGAGCCGCAACAGG
CTCCGCGTCAGCAGGCTCAGCCGCAGCAGCCGGCCGCACGGCAGCAGCCGGCGCCGGACTATGACAGCTTCGATGACGAC
ATCCCCTTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
56.571 |
100 |
0.607 |
| ssb | Neisseria gonorrhoeae MS11 |
47.727 |
100 |
0.515 |
| ssb | Glaesserella parasuis strain SC1401 |
45.355 |
100 |
0.509 |
| ssb | Neisseria meningitidis MC58 |
46.591 |
100 |
0.503 |