Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   AAG562_RS06765 Genome accession   NZ_CP152340
Coordinates   1480483..1481820 (-) Length   445 a.a.
NCBI ID   WP_003283124.1    Uniprot ID   A0A2N8RAN0
Organism   Stutzerimonas stutzeri strain NCIMB_885     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1475483..1486820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAG562_RS06755 (AAG562_06755) - 1477539..1479134 (-) 1596 WP_003283122.1 PleD family two-component system response regulator -
  AAG562_RS06760 (AAG562_06760) - 1479352..1480410 (+) 1059 WP_003283123.1 DUF2333 family protein -
  AAG562_RS06765 (AAG562_06765) pilR 1480483..1481820 (-) 1338 WP_003283124.1 sigma-54 dependent transcriptional regulator Regulator
  AAG562_RS06770 (AAG562_06770) pilS 1481953..1483545 (-) 1593 WP_003283125.1 ATP-binding protein Regulator
  AAG562_RS06775 (AAG562_06775) - 1483535..1483768 (-) 234 WP_003283126.1 PP0621 family protein -
  AAG562_RS06780 (AAG562_06780) - 1483888..1484877 (-) 990 WP_003283127.1 outer membrane protein assembly factor BamD -
  AAG562_RS06785 (AAG562_06785) rluD 1485084..1486058 (+) 975 WP_003283128.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AAG562_RS06790 (AAG562_06790) pgeF 1486055..1486792 (+) 738 WP_003283129.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49616.08 Da        Isoelectric Point: 6.5146

>NTDB_id=988437 AAG562_RS06765 WP_003283124.1 1480483..1481820(-) (pilR) [Stutzerimonas stutzeri strain NCIMB_885]
MTARQKALIIDDEPDIRELLEITLGRMKLDTRSARNLKEARELLAREHYDLCLTDMRLPDGSGLELVQYIQQQHPQLPVA
MITAYGSLDTAIGALKAGAFDFLTKPVDLNRLRELVSTALRLRAPAAEAPVDSRLLGSSPPMKILRKQIGKLARSQAPVY
ISGESGSGKELVSRLIHEQGPRNEKPFVPVNCGAIPTELMESEFFGHKKGSFSGAIEDKPGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGAQEVMVDVRILCATHKDLASEVAAGRFRQDLYYRLNVIELRVPPLRERREDIGLLAEAM
LRRLAQECGDTNARLHPDALAKLENYRFPGNVRELENMLERAYTLCEGDEIKAGDLRLADSPGLSDSSEGSLAHIDNLED
HLEEIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=988437 AAG562_RS06765 WP_003283124.1 1480483..1481820(-) (pilR) [Stutzerimonas stutzeri strain NCIMB_885]
ATGACCGCGCGCCAGAAAGCACTGATCATCGATGACGAGCCGGATATCCGCGAGCTGCTGGAAATCACCCTCGGCCGGAT
GAAGCTCGATACCCGCAGCGCACGCAACCTCAAGGAGGCGCGCGAACTGCTGGCCCGCGAGCACTACGATCTGTGCCTGA
CCGATATGCGCCTACCCGATGGCAGCGGCCTGGAACTGGTGCAGTACATCCAGCAACAGCATCCGCAGCTGCCTGTTGCG
ATGATCACCGCGTACGGCAGCCTGGATACCGCCATCGGTGCGCTCAAGGCCGGGGCGTTCGACTTCCTCACCAAACCAGT
GGATCTCAACCGGCTGCGCGAGCTGGTCAGCACCGCTTTACGCCTGCGCGCGCCTGCCGCTGAGGCACCGGTGGACAGCC
GCCTGCTGGGCAGCTCACCCCCCATGAAGATCCTGCGCAAGCAGATCGGCAAGCTCGCCCGTAGCCAGGCGCCGGTCTAT
ATAAGCGGTGAGTCCGGTAGCGGAAAGGAGCTTGTGTCCCGCCTGATCCACGAACAAGGCCCACGCAACGAGAAGCCGTT
CGTGCCGGTTAACTGCGGGGCGATCCCTACGGAGCTGATGGAAAGCGAGTTCTTCGGTCACAAGAAGGGCAGTTTCAGCG
GCGCCATCGAAGACAAGCCTGGTCTGTTCCAGGCCGCCAATGGCGGCACGCTATTTCTCGACGAGGTAGCGGACCTACCG
CTGCCGATGCAGGTCAAGCTGCTGCGCGCGATTCAGGAAAAGGCCGTTCGCGCGGTCGGCGGCGCCCAGGAAGTAATGGT
CGATGTGCGCATCCTCTGCGCCACCCACAAGGATCTGGCTAGCGAAGTTGCCGCAGGTCGTTTTCGTCAGGACCTGTATT
ACAGACTGAACGTCATCGAACTGCGCGTGCCGCCACTGCGCGAACGCCGCGAGGATATCGGGCTGCTCGCCGAAGCAATG
CTCCGGCGCCTGGCGCAGGAATGTGGCGACACCAACGCCCGCCTACATCCGGATGCGCTGGCAAAGCTGGAGAACTATCG
TTTCCCGGGGAACGTCCGTGAACTGGAGAACATGCTCGAGCGCGCGTACACACTCTGCGAAGGCGACGAGATAAAGGCCG
GCGACCTGCGCCTAGCAGACAGCCCAGGCCTGTCCGACAGTAGCGAAGGCAGCCTGGCGCACATCGATAATCTGGAAGAT
CATCTGGAAGAGATCGAGCGCAAGTTGATCATGCAGGCGTTGGAAGAAACTCGCTGGAACCGCACAGCGGCGGCCCAGCG
CCTGGGTCTGACCTTCCGCTCGATGCGCTACCGACTGAAAAAGCTCGGACTGGACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-116)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N8RAN0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

85.586

99.775

0.854
  pilR Acinetobacter baumannii strain A118

49.673

100

0.512
  luxO Vibrio cholerae strain A1552

38.031

100

0.382

Multiple sequence alignment