Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   AAG562_RS06770 Genome accession   NZ_CP152340
Coordinates   1481953..1483545 (-) Length   530 a.a.
NCBI ID   WP_003283125.1    Uniprot ID   -
Organism   Stutzerimonas stutzeri strain NCIMB_885     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1476953..1488545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAG562_RS06755 (AAG562_06755) - 1477539..1479134 (-) 1596 WP_003283122.1 PleD family two-component system response regulator -
  AAG562_RS06760 (AAG562_06760) - 1479352..1480410 (+) 1059 WP_003283123.1 DUF2333 family protein -
  AAG562_RS06765 (AAG562_06765) pilR 1480483..1481820 (-) 1338 WP_003283124.1 sigma-54 dependent transcriptional regulator Regulator
  AAG562_RS06770 (AAG562_06770) pilS 1481953..1483545 (-) 1593 WP_003283125.1 ATP-binding protein Regulator
  AAG562_RS06775 (AAG562_06775) - 1483535..1483768 (-) 234 WP_003283126.1 PP0621 family protein -
  AAG562_RS06780 (AAG562_06780) - 1483888..1484877 (-) 990 WP_003283127.1 outer membrane protein assembly factor BamD -
  AAG562_RS06785 (AAG562_06785) rluD 1485084..1486058 (+) 975 WP_003283128.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AAG562_RS06790 (AAG562_06790) pgeF 1486055..1486792 (+) 738 WP_003283129.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58919.92 Da        Isoelectric Point: 7.8561

>NTDB_id=988438 AAG562_RS06770 WP_003283125.1 1481953..1483545(-) (pilS) [Stutzerimonas stutzeri strain NCIMB_885]
MGAENLTFFGDQGRRILRLYHLYRLTIGLALVLLISSDLHNDLLQMSNPQLFQYGAWLYLILNIFVAVLVQSPERDLPVL
GLALMDVILLSGLFYFAGGTPSGIGNLLIVAVAIANILLRGKVGFFIAAVAATGLIYLTFYLSINRPEASTQYVQAGALG
TLCFAAAFLVQGLTRRLQVSENLARQRAEEVANLEALNALILQRMRTGIIVLDPQERVLLANQGALQLLGQDSLAGERIA
PRCPELLKALQQWRGNPTLRPQNLKATPGGPTLQPSFAALQHGNKLDTLVFLEDISQIAQKAQQLKLASLGRLTASIAHE
IRNPLGAISHAAQLLHESEELDASDRRLAQIIQDHSRRMNLVIENVLQLSRRRQAEPQLLDLKYWLHRFASEFRQGLSSQ
QTLHLEVVGSSLQTRMDPNQLTQVLTNLVQNGLRYSGQQHDRAQVWLRLFREEASDLPVVEVLDDGPGIAAEQLHNVFEP
FFTTESKGTGLGLYISRELCESNQARLDYRERAEGGSCFRIVFAHPRKLN

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=988438 AAG562_RS06770 WP_003283125.1 1481953..1483545(-) (pilS) [Stutzerimonas stutzeri strain NCIMB_885]
GTGGGCGCTGAAAATCTCACTTTCTTCGGCGATCAGGGGCGGCGAATTCTTCGCCTGTACCATCTTTATCGACTGACCAT
CGGCCTGGCGCTGGTGCTGCTGATCAGCAGCGACTTGCACAATGACCTGCTGCAGATGAGCAATCCGCAGCTGTTTCAGT
ACGGCGCCTGGCTCTATCTCATTCTCAACATCTTCGTCGCCGTGCTCGTCCAGAGTCCAGAGCGCGATCTGCCCGTTCTC
GGGCTTGCACTGATGGACGTGATTCTGCTGTCAGGGCTGTTCTATTTCGCCGGTGGCACGCCGAGCGGTATCGGCAACCT
GCTGATCGTGGCCGTTGCCATCGCGAATATTCTGCTGCGCGGCAAGGTGGGCTTCTTCATCGCCGCGGTTGCGGCGACAG
GACTGATTTATCTGACGTTCTACCTCAGCATCAACCGCCCCGAGGCGAGCACTCAGTATGTTCAAGCGGGCGCGCTCGGC
ACGCTCTGCTTCGCCGCCGCCTTCCTCGTACAAGGCCTGACCCGCCGGCTGCAGGTCAGCGAAAACCTGGCGCGCCAGCG
TGCCGAAGAGGTTGCGAATCTCGAGGCGCTCAATGCGCTGATCCTCCAGCGCATGCGCACCGGCATCATCGTGCTCGACC
CGCAGGAACGCGTCCTACTGGCCAACCAAGGCGCGCTGCAGTTGCTCGGGCAGGATTCGCTAGCCGGCGAGCGCATCGCC
CCGCGCTGTCCGGAACTGCTCAAAGCGCTGCAGCAATGGCGTGGCAACCCTACCCTGCGCCCACAGAATCTCAAGGCGAC
GCCCGGCGGACCGACGCTGCAACCGAGCTTTGCGGCGCTGCAGCACGGCAACAAACTCGACACCCTGGTATTTCTCGAAG
ATATCTCGCAGATCGCGCAAAAGGCGCAGCAACTAAAGCTCGCGTCGCTCGGCCGGCTCACTGCGAGCATCGCACACGAA
ATCCGCAACCCGCTGGGCGCCATCAGCCATGCCGCGCAGCTGCTTCATGAATCCGAAGAGCTGGACGCCTCCGATCGCCG
CTTGGCACAGATAATTCAGGATCATTCGCGACGGATGAACCTGGTCATTGAAAACGTCCTGCAGCTCTCACGCCGCCGTC
AGGCCGAGCCGCAGCTGCTCGACCTCAAATACTGGCTGCACCGTTTCGCGAGCGAGTTTCGTCAGGGACTCAGTTCGCAA
CAGACGCTGCACCTGGAGGTTGTAGGCAGCTCACTGCAGACGCGCATGGACCCCAATCAGCTGACACAAGTGCTCACCAA
CCTGGTTCAGAATGGTCTTCGCTACAGCGGCCAGCAGCATGACCGTGCTCAGGTATGGCTACGCCTGTTCCGGGAGGAGG
CCAGCGATCTGCCGGTCGTGGAGGTGCTCGACGACGGCCCGGGCATCGCTGCCGAACAGCTGCACAACGTGTTCGAACCG
TTCTTCACCACTGAGAGCAAAGGCACCGGGCTCGGGCTGTATATCTCGCGCGAACTGTGTGAAAGCAATCAGGCGCGCCT
GGATTACCGCGAACGCGCTGAGGGCGGCAGCTGTTTCCGTATCGTCTTCGCCCATCCACGCAAGCTGAACTAG

Domains

Predicted by InterproScan.

PAS domain (PAS_8)

(202-236)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

65.849

100

0.658

Multiple sequence alignment