Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   AAD080_RS10185 Genome accession   NZ_CP152307
Coordinates   2250786..2251097 (-) Length   103 a.a.
NCBI ID   WP_342607270.1    Uniprot ID   -
Organism   Vibrio tritonius strain JCM 16457 isolate MA35     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2245786..2256097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAD080_RS10160 lapB 2246014..2247183 (-) 1170 WP_068714140.1 lipopolysaccharide assembly protein LapB -
  AAD080_RS10165 - 2247209..2247484 (-) 276 WP_068714141.1 lipopolysaccharide assembly protein LapA domain-containing protein -
  AAD080_RS10170 ihfB 2247623..2247937 (-) 315 WP_269450765.1 integration host factor subunit beta -
  AAD080_RS10175 rpsA 2248145..2249815 (-) 1671 WP_068714143.1 30S ribosomal protein S1 -
  AAD080_RS10180 cmk 2249926..2250609 (-) 684 WP_342607269.1 (d)CMP kinase -
  AAD080_RS10185 comEA 2250786..2251097 (-) 312 WP_342607270.1 helix-hairpin-helix domain-containing protein Machinery gene
  AAD080_RS10190 ppiD 2251239..2253089 (-) 1851 WP_342607271.1 peptidylprolyl isomerase -
  AAD080_RS10195 - 2253242..2253514 (-) 273 WP_068714146.1 HU family DNA-binding protein -
  AAD080_RS10200 lon 2253709..2256060 (-) 2352 WP_342607272.1 endopeptidase La -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 11459.51 Da        Isoelectric Point: 10.7056

>NTDB_id=988227 AAD080_RS10185 WP_342607270.1 2250786..2251097(-) (comEA) [Vibrio tritonius strain JCM 16457 isolate MA35]
MHYLLLRNPHWLLSTILFLGIPTFQAVAADNNPKSEQIQITVNINEASADEMSTLLKGVGLAKAKAIVKYRQANGPFKTK
NDLTKVKGIGKSILKKNEQRIML

Nucleotide


Download         Length: 312 bp        

>NTDB_id=988227 AAD080_RS10185 WP_342607270.1 2250786..2251097(-) (comEA) [Vibrio tritonius strain JCM 16457 isolate MA35]
ATGCATTATTTATTATTACGAAACCCACATTGGCTACTCAGCACCATTTTGTTTTTGGGTATTCCTACCTTCCAAGCCGT
TGCGGCAGACAACAACCCTAAAAGTGAACAGATTCAGATAACCGTTAACATAAACGAGGCATCTGCGGATGAAATGTCCA
CTTTACTTAAAGGAGTGGGGCTGGCTAAAGCCAAAGCTATCGTAAAATACCGTCAAGCAAACGGTCCATTCAAAACGAAA
AATGACCTGACTAAAGTAAAAGGCATTGGTAAATCAATATTAAAGAAAAACGAACAGCGTATTATGCTCTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(40-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio parahaemolyticus RIMD 2210633

54.255

91.262

0.495
  comEA Vibrio cholerae C6706

51.546

94.175

0.485
  comEA Vibrio cholerae strain A1552

51.546

94.175

0.485
  comEA Vibrio campbellii strain DS40M4

50.538

90.291

0.456

Multiple sequence alignment