Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AAEU35_RS07920 Genome accession   NZ_CP152294
Coordinates   1595668..1596168 (+) Length   166 a.a.
NCBI ID   WP_003131953.1    Uniprot ID   -
Organism   Lactococcus lactis strain Q13     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1590668..1601168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAEU35_RS07905 - 1592310..1593776 (-) 1467 WP_017865200.1 amino acid permease -
  AAEU35_RS07910 - 1594299..1595153 (+) 855 WP_012898664.1 undecaprenyl-diphosphate phosphatase -
  AAEU35_RS07915 rpsF 1595345..1595638 (+) 294 WP_003131954.1 30S ribosomal protein S6 -
  AAEU35_RS07920 ssb 1595668..1596168 (+) 501 WP_003131953.1 single-stranded DNA-binding protein Machinery gene
  AAEU35_RS07925 rpsR 1596342..1596587 (+) 246 WP_003131952.1 30S ribosomal protein S18 -
  AAEU35_RS07930 - 1596787..1597560 (+) 774 WP_003131951.1 metallophosphoesterase -
  AAEU35_RS07935 - 1597642..1597950 (-) 309 WP_017865196.1 DUF960 domain-containing protein -
  AAEU35_RS07940 - 1597988..1598836 (-) 849 WP_012898662.1 MurR/RpiR family transcriptional regulator -
  AAEU35_RS07945 gnd 1599200..1600105 (+) 906 WP_038603774.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18304.13 Da        Isoelectric Point: 5.2279

>NTDB_id=988182 AAEU35_RS07920 WP_003131953.1 1595668..1596168(+) (ssb) [Lactococcus lactis strain Q13]
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGTSAGSYSAPSQSTNNTPRPQTNNNNATPNFGRDADPFGSSPMEIS
DDDLPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=988182 AAEU35_RS07920 WP_003131953.1 1595668..1596168(+) (ssb) [Lactococcus lactis strain Q13]
ATGATTAACAATGTTGTATTAGTAGGACGCATTACTCGCGATCCTGAACTTCGATACACCCCTCAAAATCAAGCTGTCGC
AACATTTTCATTGGCTGTAAACCGTCAATTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAGAATTTGGCGAATTGGGCTAAAAAAGGAGCTTTGATTGGGGTAACTGGTCGAATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGACAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGAAGGTATGGGAGGCGGAACTTCTGCTGGTTCATATTCTGCACCTAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAACAATAATGCAACACCGAATTTCGGTCGTGATGCTGATCCGTTTGGTAGCTCACCGATGGAAATTTCG
GATGATGACCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.465

100

0.627
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.803

100

0.602
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.855

0.373
  ssb Glaesserella parasuis strain SC1401

35.028

100

0.373

Multiple sequence alignment