Detailed information    

insolico Bioinformatically predicted

Overview

Name   comW   Type   Regulator
Locus tag   R8568_RS00120 Genome accession   NZ_AP026931
Coordinates   23233..23469 (+) Length   78 a.a.
NCBI ID   WP_317640365.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900701541     
Function   stabilization and activation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 18233..28469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8568_RS00110 - 22001..22210 (+) 210 Protein_15 transposase -
  R8568_RS00115 - 22245..22967 (-) 723 Protein_16 transposase -
  R8568_RS00120 (PC1520_00160) comW 23233..23469 (+) 237 WP_317640365.1 sigma(X)-activator ComW Regulator
  R8568_RS00125 (PC1520_00170) - 23700..24986 (+) 1287 WP_000205044.1 adenylosuccinate synthase -
  R8568_RS00130 (PC1520_00180) tadA 25187..25654 (+) 468 WP_000291870.1 tRNA adenosine(34) deaminase TadA -
  R8568_RS00140 (PC1520_00190) - 25840..26283 (+) 444 WP_000701992.1 dUTP diphosphatase -
  R8568_RS00145 (PC1520_00200) - 26285..26800 (+) 516 WP_001838385.1 histidine phosphatase family protein -
  R8568_RS00150 (PC1520_00210) radA 26814..28175 (+) 1362 WP_074017595.1 DNA repair protein RadA Machinery gene

Sequence

Protein


Download         Length: 78 a.a.        Molecular weight: 9792.27 Da        Isoelectric Point: 6.7049

>NTDB_id=98794 R8568_RS00120 WP_317640365.1 23233..23469(+) (comW) [Streptococcus pneumoniae strain PZ900701541]
MLQKIYEQMTNFYDSIEEEYGPTFGDNFDWEHVHFKFLIYYLVRYGIGCRRDFIVYHYRVAYRLYLEKLVMNRGFIYC

Nucleotide


Download         Length: 237 bp        

>NTDB_id=98794 R8568_RS00120 WP_317640365.1 23233..23469(+) (comW) [Streptococcus pneumoniae strain PZ900701541]
ATGTTACAAAAAATTTATGAGCAGATGACTAATTTCTATGATAGTATTGAAGAAGAGTATGGTCCTACATTTGGTGATAA
TTTTGACTGGGAACATGTTCATTTTAAATTTTTAATTTATTATTTAGTGAGATATGGCATTGGTTGTCGTAGGGATTTTA
TCGTTTACCATTATCGTGTTGCTTATCGTTTGTATCTTGAAAAATTGGTAATGAATCGGGGTTTTATTTATTGTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comW Streptococcus pneumoniae Rx1

96.154

100

0.962
  comW Streptococcus pneumoniae D39

96.154

100

0.962
  comW Streptococcus pneumoniae R6

96.154

100

0.962
  comW Streptococcus pneumoniae TIGR4

96.154

100

0.962
  comW Streptococcus mitis SK321

76.923

100

0.769
  comW Streptococcus mitis NCTC 12261

77.632

97.436

0.756

Multiple sequence alignment