Detailed information    

insolico Bioinformatically predicted

Overview

Name   ideA   Type   Regulator
Locus tag   AAGU52_RS02660 Genome accession   NZ_CP152181
Coordinates   572639..573325 (-) Length   228 a.a.
NCBI ID   WP_337226111.1    Uniprot ID   -
Organism   Edwardsiella ictaluri strain Ei-VN5     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 567639..578325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAGU52_RS02650 (AAGU52_02630) traN 567714..571406 (+) 3693 WP_379962573.1 conjugal transfer protein TraN -
  AAGU52_RS02655 (AAGU52_02635) - 571490..572587 (-) 1098 WP_379962574.1 hypothetical protein -
  AAGU52_RS02660 (AAGU52_02640) ideA 572639..573325 (-) 687 WP_337226111.1 endonuclease Regulator
  AAGU52_RS02665 (AAGU52_02645) - 573434..574036 (-) 603 WP_001963923.1 hypothetical protein -
  AAGU52_RS02670 (AAGU52_02650) - 574404..574730 (+) 327 WP_055064032.1 hypothetical protein -
  AAGU52_RS02675 (AAGU52_02655) - 574746..575165 (+) 420 WP_000795986.1 single-stranded DNA-binding protein -
  AAGU52_RS02680 (AAGU52_02660) bet 575245..576063 (+) 819 WP_000414662.1 phage recombination protein Bet -
  AAGU52_RS02685 (AAGU52_02665) - 576146..576289 (+) 144 WP_337226113.1 hypothetical protein -
  AAGU52_RS02690 (AAGU52_02670) - 576350..577366 (+) 1017 WP_379962575.1 YqaJ viral recombinase family protein -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 26527.59 Da        Isoelectric Point: 7.5668

>NTDB_id=987751 AAGU52_RS02660 WP_337226111.1 572639..573325(-) (ideA) [Edwardsiella ictaluri strain Ei-VN5]
MNRTNFLVTFLIALFAIPAFAEHPTSFSQAKRFAREIYQDNQSTFYCGCSYNNDGAIDAASCGYEPRKQPKRGERLEWEH
VVSAWEIGHQRQCWQNGGRRNCEKNDPEFSKMVSDLHNLVPSVGELNGDRSNFRFGMIPNEPRSYGQCDFEVNFKDRRAE
PPANRQGDIARIYFYMRDQYGLRLSRQQTQLFEAWSRMDPIDEWEKVRDLKIKSIQGNSNCHVSNSCS

Nucleotide


Download         Length: 687 bp        

>NTDB_id=987751 AAGU52_RS02660 WP_337226111.1 572639..573325(-) (ideA) [Edwardsiella ictaluri strain Ei-VN5]
ATGAATAGAACTAATTTTCTCGTTACCTTCTTAATAGCGTTGTTCGCAATCCCTGCATTTGCAGAACACCCAACATCGTT
CAGCCAGGCAAAACGATTTGCCCGAGAAATTTACCAAGACAACCAGAGTACGTTTTACTGTGGATGTAGCTATAACAATG
ATGGTGCGATTGATGCTGCATCTTGCGGATATGAACCAAGGAAGCAACCGAAACGAGGAGAACGCTTAGAGTGGGAGCAC
GTTGTCTCAGCATGGGAAATTGGCCATCAACGCCAATGCTGGCAAAACGGTGGACGTCGGAACTGCGAAAAGAATGATCC
TGAGTTTTCTAAAATGGTTTCGGATCTCCATAACCTCGTACCATCAGTAGGTGAGCTCAACGGGGATAGATCAAATTTTC
GATTTGGCATGATTCCGAACGAACCAAGATCCTATGGTCAATGTGATTTCGAAGTTAATTTCAAAGACCGTCGAGCAGAA
CCACCAGCTAACCGTCAGGGTGATATTGCTAGAATCTATTTCTACATGCGAGATCAATACGGCCTAAGACTAAGCAGGCA
ACAAACTCAGCTTTTTGAAGCTTGGTCAAGAATGGACCCTATTGACGAATGGGAAAAAGTACGTGATTTGAAGATTAAAA
GTATTCAAGGTAATTCAAATTGTCATGTGAGCAATAGTTGCAGCTGA

Domains

Predicted by InterProScan.

Endonuclease I (Endonuclease_1)

(41-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ideA Vibrio cholerae O1 str. 2010EL-1786

95.154

99.561

0.947
  dns Vibrio parahaemolyticus RIMD 2210633

52.838

100

0.531
  dns Aliivibrio fischeri ES114

51.739

100

0.522
  dns Vibrio cholerae strain A1552

52

98.684

0.513
  dns Campylobacter jejuni RM1221

38.182

96.491

0.368

Multiple sequence alignment