Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VAE59_RS18250 Genome accession   NZ_CP152093
Coordinates   3873408..3873971 (-) Length   187 a.a.
NCBI ID   WP_342606175.1    Uniprot ID   -
Organism   Pantoea agglomerans strain FJ2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3868408..3878971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VAE59_RS18230 - 3869510..3869905 (+) 396 WP_003855733.1 transposase -
  VAE59_RS18235 - 3870830..3871789 (-) 960 WP_342606174.1 DMT family transporter -
  VAE59_RS18240 - 3871867..3872694 (-) 828 WP_010252176.1 AraC family transcriptional regulator -
  VAE59_RS18245 - 3872815..3873336 (+) 522 WP_052271218.1 isochorismatase family protein -
  VAE59_RS18250 ssb 3873408..3873971 (-) 564 WP_342606175.1 single-stranded DNA-binding protein Machinery gene
  VAE59_RS18255 uvrA 3874196..3877024 (+) 2829 WP_010252182.1 excinuclease ABC subunit UvrA -
  VAE59_RS18260 - 3877258..3878322 (+) 1065 WP_342606176.1 NAD(P)-dependent alcohol dehydrogenase -
  VAE59_RS18265 - 3878375..3878698 (-) 324 WP_010252186.1 MmcQ/YjbR family DNA-binding protein -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 19936.88 Da        Isoelectric Point: 5.2456

>NTDB_id=987320 VAE59_RS18250 WP_342606175.1 3873408..3873971(-) (ssb) [Pantoea agglomerans strain FJ2]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGENKEITEWHRVVLFGKLAEVAGEYLKKGSQVYI
EGQLRTRKWQDQGGQERYTTEVVVNVGGTMQMLGGRQQGGNAGAGAPAGGGAQGGGNNNGWGQPQQPQGNNNQFSGGAQS
RPQPQPQSAPVSNNNEPPMDFDDDIPF

Nucleotide


Download         Length: 564 bp        

>NTDB_id=987320 VAE59_RS18250 WP_342606175.1 3873408..3873971(-) (ssb) [Pantoea agglomerans strain FJ2]
ATGGCCAGTCGTGGCGTTAACAAAGTGATTCTTGTCGGGAATCTGGGTCAGGATCCGGAAGTACGTTATATGCCAAATGG
TGGCGCTGTTGCCAACATTACGCTGGCTACGTCGGAAAGCTGGCGCGACAAGCAGACCGGTGAAAACAAAGAGATCACTG
AGTGGCACCGTGTGGTGCTGTTTGGCAAACTGGCTGAAGTCGCGGGTGAATACCTGAAAAAAGGGTCGCAGGTCTATATC
GAAGGCCAGCTGCGCACCCGTAAATGGCAGGATCAGGGTGGCCAGGAGCGTTACACCACCGAAGTCGTGGTTAACGTTGG
TGGTACCATGCAGATGCTGGGTGGCCGTCAGCAGGGCGGTAATGCCGGTGCAGGCGCTCCAGCCGGTGGTGGCGCGCAGG
GCGGTGGCAACAACAATGGCTGGGGTCAGCCGCAGCAGCCGCAGGGCAACAATAACCAGTTCAGTGGCGGCGCGCAGTCC
CGTCCGCAGCCGCAGCCACAGAGCGCGCCGGTCAGCAACAACAACGAACCACCAATGGATTTCGACGACGATATTCCGTT
CTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

68.229

100

0.701
  ssb Glaesserella parasuis strain SC1401

56.021

100

0.572
  ssb Neisseria meningitidis MC58

45.408

100

0.476
  ssb Neisseria gonorrhoeae MS11

46.032

100

0.465

Multiple sequence alignment