Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NYE63_RS28415 Genome accession   NZ_CP152053
Coordinates   5812705..5813232 (-) Length   175 a.a.
NCBI ID   WP_076368498.1    Uniprot ID   -
Organism   Peribacillus sp. FSL E2-0159     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5807705..5818232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE63_RS28395 (NYE63_28390) rplI 5808775..5809224 (-) 450 WP_342603670.1 50S ribosomal protein L9 -
  NYE63_RS28400 (NYE63_28395) - 5809221..5811191 (-) 1971 WP_342603671.1 DHH family phosphoesterase -
  NYE63_RS28405 (NYE63_28400) - 5811234..5812181 (-) 948 WP_342603672.1 YybS family protein -
  NYE63_RS28410 (NYE63_28405) rpsR 5812418..5812657 (-) 240 WP_053348323.1 30S ribosomal protein S18 -
  NYE63_RS28415 (NYE63_28410) ssbA 5812705..5813232 (-) 528 WP_076368498.1 single-stranded DNA-binding protein Machinery gene
  NYE63_RS28420 (NYE63_28415) rpsF 5813302..5813586 (-) 285 WP_034316153.1 30S ribosomal protein S6 -
  NYE63_RS28425 (NYE63_28420) ychF 5813779..5814879 (-) 1101 WP_098370319.1 redox-regulated ATPase YchF -
  NYE63_RS28430 (NYE63_28425) - 5815046..5815243 (-) 198 WP_034316158.1 DUF951 domain-containing protein -
  NYE63_RS28435 (NYE63_28430) - 5815264..5816100 (-) 837 WP_342603673.1 mechanosensitive ion channel family protein -
  NYE63_RS28440 (NYE63_28435) yyaC 5816493..5817128 (+) 636 WP_342603674.1 spore protease YyaC -
  NYE63_RS28445 (NYE63_28440) - 5817182..5817883 (-) 702 WP_342603675.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19388.07 Da        Isoelectric Point: 4.8282

>NTDB_id=987048 NYE63_RS28415 WP_076368498.1 5812705..5813232(-) (ssbA) [Peribacillus sp. FSL E2-0159]
MMNRVVLVGRLTKDPELRYTPNGVPVATFTLAVNRGFTNQQGEREADFINCVVWRKPAENVANFLKKGSLAGVDGRVQTR
NYEGQDGKRVYVTEILAESVQFLEPRSSSAGERNEGGSYGGGQRSYGNNNGNDNNSYGQNPNQNQRSNNNYTRVDDDPFA
NDGKTIDISDDDLPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=987048 NYE63_RS28415 WP_076368498.1 5812705..5813232(-) (ssbA) [Peribacillus sp. FSL E2-0159]
ATGATGAATCGCGTAGTTTTGGTAGGACGCTTAACTAAAGATCCTGAATTACGATATACACCTAATGGAGTTCCCGTAGC
TACCTTTACTTTAGCTGTTAACCGTGGTTTTACGAATCAGCAGGGTGAACGTGAAGCGGACTTCATTAACTGTGTAGTTT
GGCGTAAACCGGCAGAAAATGTAGCTAACTTCTTGAAAAAGGGCAGTTTAGCTGGCGTGGATGGACGTGTCCAAACACGT
AATTATGAAGGACAAGACGGCAAACGCGTATATGTGACGGAGATTCTGGCTGAGAGCGTTCAATTCCTTGAACCACGAAG
CAGTTCAGCGGGTGAAAGAAATGAAGGCGGTTCTTACGGTGGGGGTCAAAGAAGTTATGGCAATAATAATGGAAATGACA
ACAATTCGTATGGACAAAATCCTAATCAGAATCAACGGAGCAATAACAACTACACTCGTGTAGATGATGATCCATTTGCA
AATGACGGTAAAACAATCGACATTTCAGATGACGATCTTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

69.101

100

0.703
  ssb Latilactobacillus sakei subsp. sakei 23K

55.618

100

0.566
  ssb Glaesserella parasuis strain SC1401

35.294

100

0.377
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

60.571

0.371

Multiple sequence alignment