Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   MHI16_RS11440 Genome accession   NZ_CP152044
Coordinates   2246151..2246444 (-) Length   97 a.a.
NCBI ID   WP_003217322.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-0923     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2241151..2251444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI16_RS11390 (MHI16_11390) sinR 2241321..2241656 (+) 336 WP_012010555.1 transcriptional regulator SinR Regulator
  MHI16_RS11395 (MHI16_11395) - 2241724..2242524 (-) 801 WP_058014688.1 TasA family protein -
  MHI16_RS11400 (MHI16_11400) - 2242582..2243154 (-) 573 WP_058014687.1 signal peptidase I -
  MHI16_RS11405 (MHI16_11405) tapA 2243199..2243726 (-) 528 WP_058014686.1 amyloid fiber anchoring/assembly protein TapA -
  MHI16_RS11410 (MHI16_11410) - 2243993..2244304 (+) 312 WP_061410249.1 YqzG/YhdC family protein -
  MHI16_RS11415 (MHI16_11415) - 2244338..2244532 (-) 195 WP_044140973.1 YqzE family protein -
  MHI16_RS11420 (MHI16_11420) comGG 2244592..2244975 (-) 384 WP_058014684.1 competence type IV pilus minor pilin ComGG -
  MHI16_RS11425 (MHI16_11425) comGF 2244972..2245472 (-) 501 WP_061408553.1 competence type IV pilus minor pilin ComGF -
  MHI16_RS11430 (MHI16_11430) comGE 2245411..2245728 (-) 318 WP_058014682.1 competence type IV pilus minor pilin ComGE -
  MHI16_RS11435 (MHI16_11435) comGD 2245712..2246158 (-) 447 WP_061408555.1 competence type IV pilus minor pilin ComGD -
  MHI16_RS11440 (MHI16_11440) comGC 2246151..2246444 (-) 294 WP_003217322.1 competence type IV pilus major pilin ComGC Machinery gene
  MHI16_RS11445 (MHI16_11445) comGB 2246461..2247501 (-) 1041 WP_061408557.1 competence type IV pilus assembly protein ComGB -
  MHI16_RS11450 (MHI16_11450) comGA 2247482..2248552 (-) 1071 WP_081106456.1 competence type IV pilus ATPase ComGA Machinery gene
  MHI16_RS11455 (MHI16_11455) - 2248812..2249402 (-) 591 WP_058014679.1 hypothetical protein -
  MHI16_RS11460 (MHI16_11460) - 2249803..2250675 (-) 873 WP_058014678.1 STAS domain-containing protein -
  MHI16_RS11470 (MHI16_11470) - 2250899..2251279 (-) 381 WP_003217382.1 Spx/MgsR family RNA polymerase-binding regulatory protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10739.69 Da        Isoelectric Point: 7.3837

>NTDB_id=986611 MHI16_RS11440 WP_003217322.1 2246151..2246444(-) (comGC) [Bacillus sp. FSL K6-0923]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQTIQAKGCEGLKSMVSTQVMAYELEHDGKTPSLAELEKEGYVKKGLT
CPNGKAIVIQNGHVKHE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=986611 MHI16_RS11440 WP_003217322.1 2246151..2246444(-) (comGC) [Bacillus sp. FSL K6-0923]
ATGAATGATAAAGGATTTACTCTGTTAGAAATGTTAATTGTCATGCTTGTGATTTCAATTCTTTTACTGATTACCATTCC
GAATATCACTCGTCACCACCAAACGATTCAAGCAAAGGGCTGTGAAGGGCTTAAATCAATGGTGAGCACACAGGTGATGG
CATATGAATTAGAGCACGATGGCAAGACACCATCTTTAGCTGAATTAGAAAAAGAAGGTTATGTCAAAAAGGGATTAACG
TGTCCTAATGGAAAAGCGATTGTCATTCAAAACGGCCATGTGAAGCATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

68.041

100

0.68
  comGC Staphylococcus aureus MW2

41.304

94.845

0.392
  comGC Staphylococcus aureus N315

41.304

94.845

0.392

Multiple sequence alignment