Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   NST80_RS09550 Genome accession   NZ_CP152039
Coordinates   2045649..2047619 (-) Length   656 a.a.
NCBI ID   WP_045771786.1    Uniprot ID   A0AAX1YDG2
Organism   Streptococcus sp. FSL K6-1323     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2040649..2052619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST80_RS09535 (NST80_09535) - 2041254..2042144 (-) 891 WP_045771785.1 hypothetical protein -
  NST80_RS09540 (NST80_09540) - 2042199..2043506 (-) 1308 WP_183138284.1 GHKL domain-containing protein -
  NST80_RS09545 (NST80_09545) gltX 2043959..2045413 (-) 1455 WP_013991233.1 glutamate--tRNA ligase -
  NST80_RS09550 (NST80_09550) amiA 2045649..2047619 (-) 1971 WP_045771786.1 peptide ABC transporter substrate-binding protein Regulator
  NST80_RS09555 (NST80_09555) rplA 2047801..2048490 (-) 690 WP_002885800.1 50S ribosomal protein L1 -
  NST80_RS09560 (NST80_09560) rplK 2048590..2049015 (-) 426 WP_002885648.1 50S ribosomal protein L11 -
  NST80_RS09565 (NST80_09565) - 2049187..2049540 (+) 354 WP_002885872.1 DUF3397 domain-containing protein -
  NST80_RS09570 (NST80_09570) - 2049635..2050132 (-) 498 WP_045771787.1 carbonic anhydrase -
  NST80_RS09575 (NST80_09575) - 2050285..2050980 (-) 696 WP_037598509.1 TIGR00266 family protein -
  NST80_RS09580 (NST80_09580) radA 2051068..2052429 (-) 1362 WP_072903619.1 DNA repair protein RadA Machinery gene

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 73047.89 Da        Isoelectric Point: 5.0178

>NTDB_id=986343 NST80_RS09550 WP_045771786.1 2045649..2047619(-) (amiA) [Streptococcus sp. FSL K6-1323]
MKKSKVFLLATVGLLSVGVLTACSSSSKTSGKTYNYVYGGDPATLDYVSTNKKNMTTAVSNGVDGLFENDQYGNLKPSVA
ENWSVSQDGLTYTYKIRKGVKWYTSDGEEYANVTAKDFVTGLKHAADTNSEAIYLLQNSVKGLNDYLSGANKDFSNVGIK
AVDDYTLQYTLSQPEPYWNSKLTYSVTWPVNEDFLKSKGKDFGKSTDPTSILYNGPYLLKSLTTKSSIEFTKNENYWDKD
NVYFDTVKLTYDDGTDQESLERNFTDGVYNLARLYPTSSNYSKVKKQYKDNIFYTQPGAAVEGVGVNIDRQTYDHTSKEN
DQQKTSTKTALLNKDFRQALGFAIDRTNYAAQLNGKEGGSTAVRNIFVKPDFVQADGKDFGTMVMDQLPAYGDEWSGVNL
ADSQDGLYNPEKAKAEFAKAKEALQAEGVQFPIHLDVPVNQSNKIFVNQVQSLKQSIESALGKDNVVLDLHQLSTDDFYN
ITYSASNAAAEDWDLSVGVAWEPDYLDPSTYLDVLKTTNGENTKSFMGYDNPNSQAVEKVGLKEYDQLVDDASKETTDLT
ARYEKYAKAQAWLTDSALYIPTTTYNGAAAVISRIKPFSGAYAQAGDKGSTYYFKYLKSQDDIVTKKQYDSAYKDWLKER
AKSNDKAQKDLAKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=986343 NST80_RS09550 WP_045771786.1 2045649..2047619(-) (amiA) [Streptococcus sp. FSL K6-1323]
ATGAAAAAGAGTAAGGTATTTTTACTAGCAACCGTAGGCCTGTTATCTGTAGGTGTTTTAACGGCTTGCTCGTCATCAAG
TAAGACGTCTGGTAAGACTTATAATTATGTTTACGGTGGCGATCCTGCAACCCTAGACTATGTTTCTACAAATAAGAAAA
ACATGACGACAGCCGTTAGTAACGGTGTTGATGGTTTGTTTGAAAATGACCAATATGGGAATCTAAAACCTTCTGTCGCT
GAAAACTGGTCTGTTTCTCAAGATGGTTTGACCTATACTTACAAGATTCGTAAGGGTGTCAAATGGTACACTTCAGACGG
TGAAGAATATGCCAATGTAACAGCTAAAGACTTTGTAACAGGTCTTAAGCATGCTGCTGATACTAATTCTGAAGCGATTT
ATTTGCTACAAAACTCAGTTAAGGGCTTGAATGATTACCTTTCAGGTGCCAACAAGGACTTCTCAAATGTTGGTATCAAA
GCAGTTGATGATTACACTTTGCAATATACGCTTAGCCAACCAGAACCTTACTGGAATTCAAAATTGACCTACTCTGTTAC
TTGGCCTGTTAATGAAGATTTCTTGAAATCTAAAGGTAAAGACTTTGGTAAGTCAACAGACCCAACATCTATTCTTTATA
ACGGTCCATATCTTCTTAAATCTTTGACAACGAAATCTTCTATTGAGTTCACCAAGAATGAAAACTACTGGGATAAGGAT
AATGTCTATTTTGATACAGTTAAATTGACTTACGATGATGGTACAGACCAAGAATCCTTGGAACGTAACTTCACTGATGG
AGTCTATAACTTAGCTCGTCTATACCCAACTAGCTCAAACTATTCTAAAGTTAAAAAACAGTACAAAGACAATATTTTCT
ATACACAACCTGGAGCAGCTGTAGAAGGTGTCGGTGTTAATATCGATCGTCAAACTTATGACCATACATCTAAAGAAAAT
GATCAACAAAAGACATCAACTAAGACAGCTCTTCTTAACAAAGATTTCCGTCAAGCATTAGGTTTTGCCATTGACCGTAC
AAATTACGCCGCACAACTTAACGGTAAGGAAGGTGGAAGCACTGCCGTTCGTAATATCTTTGTTAAACCAGACTTTGTTC
AAGCAGATGGTAAGGACTTCGGAACAATGGTAATGGATCAACTTCCAGCTTATGGTGATGAGTGGTCTGGTGTGAATCTT
GCAGACAGTCAAGACGGTCTTTATAACCCAGAAAAAGCTAAGGCTGAATTTGCTAAAGCCAAAGAAGCTCTTCAAGCAGA
AGGGGTTCAGTTCCCAATCCATTTGGATGTTCCTGTCAATCAGTCAAATAAAATCTTTGTGAACCAAGTGCAGTCACTTA
AACAATCTATTGAATCAGCTCTTGGAAAAGACAATGTTGTACTTGATCTTCATCAATTGTCAACTGATGATTTCTATAAC
ATTACCTACTCTGCTTCAAATGCAGCGGCAGAGGATTGGGACTTGTCAGTAGGTGTGGCTTGGGAGCCTGACTACCTTGA
TCCATCAACTTATCTTGATGTCTTGAAGACTACAAATGGTGAAAATACTAAATCTTTCATGGGTTATGACAATCCAAATA
GTCAAGCGGTTGAAAAAGTAGGTCTTAAAGAATATGACCAATTGGTTGATGATGCTTCTAAGGAAACAACAGACTTGACG
GCTCGTTATGAAAAATATGCAAAAGCTCAGGCATGGTTGACGGATAGTGCACTTTATATCCCAACGACTACTTATAACGG
TGCAGCTGCTGTAATTTCTCGTATTAAGCCATTCTCAGGAGCTTATGCTCAAGCCGGTGATAAAGGTTCTACATACTACT
TCAAGTATCTTAAATCTCAAGATGATATTGTGACTAAGAAACAATATGATTCAGCTTATAAAGATTGGCTTAAAGAAAGA
GCGAAATCTAATGACAAAGCTCAAAAAGATCTTGCCAAACACGTTAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

69.817

100

0.698
  amiA3 Streptococcus thermophilus LMD-9

68.037

100

0.681
  amiA3 Streptococcus thermophilus LMG 18311

67.275

100

0.674

Multiple sequence alignment