Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NST80_RS09580 Genome accession   NZ_CP152039
Coordinates   2051068..2052429 (-) Length   453 a.a.
NCBI ID   WP_072903619.1    Uniprot ID   A0A1V0HAK4
Organism   Streptococcus sp. FSL K6-1323     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2046068..2057429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST80_RS09555 (NST80_09555) rplA 2047801..2048490 (-) 690 WP_002885800.1 50S ribosomal protein L1 -
  NST80_RS09560 (NST80_09560) rplK 2048590..2049015 (-) 426 WP_002885648.1 50S ribosomal protein L11 -
  NST80_RS09565 (NST80_09565) - 2049187..2049540 (+) 354 WP_002885872.1 DUF3397 domain-containing protein -
  NST80_RS09570 (NST80_09570) - 2049635..2050132 (-) 498 WP_045771787.1 carbonic anhydrase -
  NST80_RS09575 (NST80_09575) - 2050285..2050980 (-) 696 WP_037598509.1 TIGR00266 family protein -
  NST80_RS09580 (NST80_09580) radA 2051068..2052429 (-) 1362 WP_072903619.1 DNA repair protein RadA Machinery gene
  NST80_RS09585 (NST80_09585) - 2052426..2052893 (-) 468 WP_073687066.1 isochorismatase family protein -
  NST80_RS09590 (NST80_09590) - 2052904..2053350 (-) 447 WP_045771790.1 dUTP diphosphatase -
  NST80_RS09595 (NST80_09595) - 2053558..2054160 (+) 603 WP_002886986.1 NADPH-dependent FMN reductase -
  NST80_RS09600 (NST80_09600) - 2054179..2055429 (+) 1251 WP_002885631.1 NAD(P)H-dependent oxidoreductase -
  NST80_RS09605 (NST80_09605) - 2055546..2056337 (+) 792 WP_045771791.1 formate/nitrite transporter family protein -
  NST80_RS09610 (NST80_09610) - 2056346..2056912 (+) 567 WP_002886989.1 MptD family putative ECF transporter S component -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49449.83 Da        Isoelectric Point: 6.6528

>NTDB_id=986344 NST80_RS09580 WP_072903619.1 2051068..2052429(-) (radA) [Streptococcus sp. FSL K6-1323]
MAKKKSTFVCRECGYNSPKYLGRCPNCSSWSSFEEEVEVQEVKNARVSLTGEKSKPTKLKEVSSINYARIKTDMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAVRSQVE
AIKPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQIAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKELPTNPQEAFIGEIGLTGEIR
RVTRIEQRINEAAKLGFTKIYAPKNSLHGMKIPEGIQVVGVTTVGEVLKKVFS

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=986344 NST80_RS09580 WP_072903619.1 2051068..2052429(-) (radA) [Streptococcus sp. FSL K6-1323]
ATAGCAAAGAAAAAATCAACTTTTGTTTGTCGAGAATGTGGCTACAATTCACCCAAATATCTAGGGCGCTGTCCCAACTG
TTCTTCTTGGTCCTCTTTTGAAGAAGAGGTTGAGGTGCAGGAGGTGAAAAATGCCCGTGTCAGTTTGACGGGTGAAAAGT
CTAAACCAACTAAATTAAAAGAAGTATCCTCAATCAATTATGCCCGCATAAAGACTGATATGGACGAGTTTAACCGTGTT
TTAGGTGGTGGTGTGGTTCCGGGAAGTCTGGTTCTTATTGGAGGAGATCCAGGGATAGGGAAATCAACCCTCCTCTTACA
GGTGTCAACGCAACTGGCTAACAAGGGTACGGTCCTCTATGTATCTGGAGAAGAATCTGCCGAGCAAATCAAATTGCGGA
GCGAACGTTTAGGTGATATTGATAACGAATTTTATCTTTATGCTGAGACCAATATGCAAGCGGTTCGCAGCCAAGTGGAG
GCTATAAAACCCGATTTCCTCATTATCGACTCTATTCAGACCATCATGAGTCCAGAGATTTCTGGCGTTCAAGGTTCTGT
ATCTCAGGTTCGTGAAGTCACTGCTGAACTTATGCAGATTGCCAAAACCAATAACATTGCCACATTTATTGTTGGGCATG
TGACCAAGGAGGGACAGCTGGCAGGACCACGTATGTTGGAACACATGGTGGATACTGTGCTCTATTTTGAGGGGGAACGT
CATCATACCTTCCGTATTTTACGAGCAGTCAAAAACCGTTTTGGTTCAACCAATGAGATTGGGATTTTTGAGATGCAGTC
TGGTGGTTTGGTAGAGGTGCTAAATCCTAGCCAGGTTTTCTTAGAGGAACGCCTAGACGGTGCTACAGGTTCTGCCATTG
TTGTGACAATGGAAGGTAGCAGACCTATTCTAGCTGAAGTTCAAGCCTTGGTGACACCAACCGTCTTTGGTAATGCCAAG
CGGACAACGACGGGACTGGACTTTAACCGTGTCAGCCTCATTATGGCTGTTTTAGAGAAACGTTGTGGCCTTCTTCTCCA
AAATCAAGATGCCTATCTCAAATCGGCTGGTGGTGTCAAATTGGACGAGCCAGCTATTGACCTTGCTGTAGCGGTTGCGA
TTGCTTCTAGTTACAAGGAGCTTCCAACCAATCCACAAGAAGCTTTTATAGGAGAAATTGGGTTGACTGGAGAGATTCGC
CGAGTAACTCGCATTGAACAGCGCATTAATGAAGCTGCTAAATTAGGTTTTACTAAGATTTATGCTCCGAAGAATTCCCT
GCATGGCATGAAAATTCCAGAAGGTATCCAGGTCGTTGGCGTTACGACAGTGGGAGAAGTACTCAAAAAAGTTTTTTCTT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(63-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V0HAK4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.742

100

0.887
  radA Streptococcus pneumoniae D39

88.742

100

0.887
  radA Streptococcus pneumoniae R6

88.742

100

0.887
  radA Streptococcus pneumoniae TIGR4

88.742

100

0.887
  radA Streptococcus mitis NCTC 12261

88.742

100

0.887
  radA Streptococcus mitis SK321

88.742

100

0.887
  radA Bacillus subtilis subsp. subtilis str. 168

61.369

100

0.614

Multiple sequence alignment