Detailed information    

insolico Bioinformatically predicted

Overview


Name   comEC/celB   Type   Machinery gene
Locus tag   NST80_RS08175 Genome accession   NZ_CP152039
Coordinates   1766819..1769059 (-) Length   746 a.a.
NCBI ID   WP_183138266.1    Uniprot ID   -
Organism   Streptococcus sp. FSL K6-1323     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1761819..1774059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST80_RS08155 (NST80_08155) - 1762686..1763546 (-) 861 WP_004183173.1 methionyl aminopeptidase -
  NST80_RS08160 (NST80_08160) spxR 1763587..1764867 (-) 1281 WP_002884454.1 CBS-HotDog domain-containing transcription factor SpxR -
  NST80_RS08165 (NST80_08165) - 1764860..1765405 (-) 546 WP_013991031.1 GNAT family N-acetyltransferase -
  NST80_RS08170 (NST80_08170) - 1765471..1766733 (-) 1263 WP_013991032.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  NST80_RS08175 (NST80_08175) comEC/celB 1766819..1769059 (-) 2241 WP_183138266.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NST80_RS08180 (NST80_08180) comEA 1769049..1769747 (-) 699 WP_013991034.1 helix-hairpin-helix domain-containing protein Machinery gene
  NST80_RS08185 (NST80_08185) - 1769855..1770610 (-) 756 WP_045768783.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  NST80_RS08190 (NST80_08190) - 1770740..1771675 (+) 936 WP_045768797.1 polysaccharide deacetylase family protein -
  NST80_RS08195 (NST80_08195) - 1771725..1772489 (+) 765 WP_013991037.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  NST80_RS08200 (NST80_08200) - 1772493..1772762 (+) 270 WP_013991038.1 GIY-YIG nuclease family protein -

Sequence


Protein


Download         Length: 746 a.a.        Molecular weight: 84522.45 Da        Isoelectric Point: 9.8651

>NTDB_id=986335 NST80_RS08175 WP_183138266.1 1766819..1769059(-) (comEC/celB) [Streptococcus sp. FSL K6-1323]
MWLKKAPINLFSLALLIAALYFTVFVTNVYAIGTFVFLMVCFLKHHWKNKAALKLVGIVGSFFLVYFLFLHHKATIQDKQ
APAEINQVTLVADTLSVNGEQLSAIGKAKGQTYQVFYRLKSEKEQHFFKTTSQTLVLKGKIKLSPATGQRNFQGFNYQSY
LASQGIYRMAQIERLDYVVSQKSLSPLAFFHQLRRRALVHIQTHFPSPMRHYMTGLLFGYLDKEFDEQSQLYTSLGIIHL
FALSGMQVGFFLGWFRYGLLRLGLPKDYLFIILLPFSLCYGLMTGWTASVLRSLIQSLLAEFGIKKLDNMGITLLLLFLF
LPHFLLTVGGVLSCSYAFLLCLFDFEEMSSLKKSICMSLVLSLGILPFLTYYYGTFQPVSLILTAIFSIVFDNFLLPVLT
VFFALSGLVIFSQINPLFEWMETFLTWIQSWIGQPLILGKPSLLQFSLMIAVLVMLFDFWKKPQFRICLLMIFGLLMVWV
KHPLTNEVTMVDVGQGDSIFLRSMKGDTILIDVGGKVTFGSKEKWQEGSQTSNAEKTLIPYLQARGVSQIDHLVLTHTDT
DHIGDLEEVAKRFKIKEICVSQGALTKPSFVKRLRTLKRPVHTLKAGDKLPMMGSKLQVLYPNKIGDGGNNDSIVLYGKL
LGSSFLFTGDLEKEGEEELMASYPTLRASVLKAGHHGSKGSSSEAFLDQLQPSLALVSAGENNRYKHPNDETLERFKQRH
IKVLRTDKDGAIRFKGWFKWSSETVR

Nucleotide


Download         Length: 2241 bp        

>NTDB_id=986335 NST80_RS08175 WP_183138266.1 1766819..1769059(-) (comEC/celB) [Streptococcus sp. FSL K6-1323]
ATGTGGCTTAAAAAGGCTCCAATCAATCTTTTTTCCTTGGCTCTGTTAATAGCTGCTCTTTATTTTACGGTTTTTGTCAC
TAATGTTTATGCTATTGGGACTTTTGTCTTTCTTATGGTCTGTTTTTTGAAACATCATTGGAAGAATAAGGCTGCCCTAA
AGTTGGTGGGAATTGTAGGTAGTTTCTTTTTGGTCTACTTTTTATTCTTACACCACAAAGCTACCATACAAGATAAACAA
GCTCCTGCTGAAATCAATCAGGTGACTCTGGTTGCTGATACGTTATCGGTTAATGGTGAGCAATTATCAGCTATCGGAAA
GGCAAAGGGACAAACTTATCAGGTCTTTTACCGACTCAAATCTGAGAAGGAGCAGCATTTTTTTAAGACTACTAGCCAAA
CGCTGGTATTAAAGGGGAAAATAAAGTTATCCCCAGCAACTGGTCAACGTAATTTTCAAGGGTTCAATTATCAGTCTTAT
CTAGCCAGCCAAGGTATTTATCGAATGGCTCAGATTGAGCGCTTGGATTATGTGGTGTCTCAAAAATCTCTATCTCCCTT
AGCTTTTTTCCATCAATTGAGGAGAAGGGCTTTGGTTCATATCCAGACACATTTTCCTAGTCCTATGAGACACTATATGA
CAGGCCTACTCTTTGGGTATTTGGATAAGGAGTTCGATGAGCAGAGTCAGCTTTACACAAGCCTAGGTATTATTCATCTA
TTCGCACTTTCGGGGATGCAAGTGGGCTTTTTTCTGGGATGGTTTCGCTATGGACTCCTACGCTTGGGCCTTCCTAAAGA
TTATCTATTTATTATCTTGCTACCTTTTTCCTTATGCTATGGCTTAATGACAGGTTGGACAGCTTCAGTCCTACGTTCCC
TGATTCAAAGTTTGTTGGCGGAGTTTGGTATTAAAAAACTGGATAATATGGGAATAACCTTACTTCTATTGTTTCTCTTT
TTACCTCATTTTCTTTTAACAGTGGGAGGTGTTTTAAGTTGTTCCTATGCTTTTTTGTTGTGTTTGTTTGATTTTGAGGA
GATGTCATCTCTTAAAAAGTCAATCTGTATGAGCTTGGTATTGAGTCTTGGGATTTTGCCTTTTCTAACTTACTATTATG
GGACCTTTCAACCGGTGAGTTTAATTCTGACGGCGATATTTTCCATAGTCTTTGATAACTTTCTCTTGCCTGTCTTGACG
GTCTTCTTTGCCCTTTCAGGACTGGTAATCTTTTCTCAAATCAACCCACTTTTTGAATGGATGGAGACCTTTTTGACTTG
GATACAATCTTGGATAGGCCAGCCATTAATTTTAGGGAAACCTAGTTTGTTACAGTTTAGCTTGATGATAGCTGTATTGG
TTATGCTCTTTGATTTTTGGAAAAAGCCTCAGTTTAGGATTTGCCTTTTGATGATTTTTGGTCTTTTGATGGTCTGGGTC
AAACATCCTTTAACCAATGAGGTGACTATGGTTGACGTTGGTCAGGGAGATAGTATTTTTCTGAGGAGTATGAAAGGCGA
TACCATCCTAATTGATGTGGGTGGCAAGGTGACTTTCGGTTCAAAGGAAAAATGGCAGGAGGGGAGCCAGACGAGCAATG
CAGAGAAAACCTTGATTCCCTATCTACAGGCTAGAGGAGTGTCTCAAATTGATCACCTGGTCCTGACGCATACGGACACA
GACCATATTGGTGATTTGGAAGAAGTGGCCAAGAGGTTTAAGATTAAGGAAATCTGTGTCAGTCAGGGGGCTTTGACTAA
ACCTAGTTTTGTTAAAAGACTTCGGACCTTAAAACGACCAGTTCACACTCTAAAGGCTGGCGACAAATTACCCATGATGG
GAAGTAAGCTACAGGTTCTTTATCCCAATAAAATTGGTGATGGTGGTAACAACGATTCGATAGTTCTTTACGGAAAACTA
TTAGGAAGCAGTTTTTTGTTTACTGGTGATTTGGAAAAAGAAGGAGAGGAGGAGCTGATGGCCAGCTATCCAACTTTAAG
GGCAAGCGTCCTCAAAGCTGGACACCACGGTTCAAAAGGCTCATCGTCTGAAGCTTTTTTGGATCAGTTGCAGCCCTCCC
TTGCACTTGTTTCAGCTGGTGAGAACAATCGTTATAAACATCCAAATGATGAAACATTAGAACGTTTTAAGCAACGTCAC
ATTAAGGTTTTACGAACAGATAAAGACGGAGCCATACGTTTTAAGGGTTGGTTTAAATGGTCAAGTGAAACTGTCCGATA
A


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/celB Streptococcus mitis SK321

48.529

100

0.487

  comEC/celB Streptococcus mitis NCTC 12261

48.193

100

0.483

  comEC/celB Streptococcus pneumoniae Rx1

46.658

100

0.468

  comEC/celB Streptococcus pneumoniae D39

46.658

100

0.468

  comEC/celB Streptococcus pneumoniae R6

46.658

100

0.468

  comEC/celB Streptococcus pneumoniae TIGR4

46.524

100

0.466

  comEC Lactococcus lactis subsp. cremoris KW2

43.514

99.196

0.432


Multiple sequence alignment