Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   NYE42_RS15760 Genome accession   NZ_CP152036
Coordinates   3182761..3183405 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus sp. FSL K6-2865     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3177761..3188405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE42_RS15725 (NYE42_15705) - 3178946..3179377 (+) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -
  NYE42_RS15730 (NYE42_15710) - 3179377..3179718 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  NYE42_RS15735 (NYE42_15715) - 3179711..3181192 (+) 1482 WP_042635451.1 Na+/H+ antiporter subunit D -
  NYE42_RS15740 (NYE42_15720) - 3181198..3181674 (+) 477 WP_007408672.1 Na+/H+ antiporter subunit E -
  NYE42_RS15745 (NYE42_15725) - 3181674..3181958 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  NYE42_RS15750 (NYE42_15730) mnhG 3181942..3182316 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  NYE42_RS15755 (NYE42_15735) - 3182356..3182739 (-) 384 WP_007408674.1 hotdog fold thioesterase -
  NYE42_RS15760 (NYE42_15740) comA 3182761..3183405 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  NYE42_RS15765 (NYE42_15745) comP 3183486..3185795 (-) 2310 WP_352426576.1 histidine kinase Regulator
  NYE42_RS15770 (NYE42_15750) comX 3185815..3185991 (-) 177 WP_007408675.1 competence pheromone ComX -
  NYE42_RS15775 (NYE42_15755) comQ 3185991..3186875 (-) 885 WP_061862640.1 class 1 isoprenoid biosynthesis enzyme Regulator
  NYE42_RS15780 (NYE42_15760) degQ 3187060..3187200 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  NYE42_RS15785 (NYE42_15765) - 3187666..3188007 (+) 342 WP_069006914.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=986156 NYE42_RS15760 WP_003152052.1 3182761..3183405(-) (comA) [Bacillus sp. FSL K6-2865]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=986156 NYE42_RS15760 WP_003152052.1 3182761..3183405(-) (comA) [Bacillus sp. FSL K6-2865]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCACGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCAATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment