Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MHI58_RS19685 Genome accession   NZ_CP152035
Coordinates   3827605..3828147 (-) Length   180 a.a.
NCBI ID   WP_045034920.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-2869     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3822605..3833147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI58_RS19660 (MHI58_19650) - 3822878..3823489 (-) 612 WP_045034916.1 alpha/beta hydrolase -
  MHI58_RS19665 (MHI58_19655) - 3823486..3824436 (-) 951 WP_045034917.1 ring-cleaving dioxygenase -
  MHI58_RS19670 (MHI58_19660) - 3824649..3826166 (-) 1518 WP_045034918.1 ABC transporter permease/substrate-binding protein -
  MHI58_RS19675 (MHI58_19665) - 3826159..3827124 (-) 966 WP_045034919.1 ABC transporter ATP-binding protein -
  MHI58_RS19680 (MHI58_19670) rpsR 3827324..3827563 (-) 240 WP_008347556.1 30S ribosomal protein S18 -
  MHI58_RS19685 (MHI58_19675) ssbA 3827605..3828147 (-) 543 WP_045034920.1 single-stranded DNA-binding protein SsbA Machinery gene
  MHI58_RS19690 (MHI58_19680) rpsF 3828184..3828471 (-) 288 WP_008347557.1 30S ribosomal protein S6 -
  MHI58_RS19695 (MHI58_19685) ychF 3828580..3829680 (-) 1101 WP_007497458.1 redox-regulated ATPase YchF -
  MHI58_RS19700 (MHI58_19690) - 3829896..3830102 (-) 207 WP_008347561.1 DUF951 domain-containing protein -
  MHI58_RS19705 (MHI58_19695) - 3830397..3831716 (+) 1320 WP_045034921.1 phage hydrolase -
  MHI58_RS19710 (MHI58_19700) - 3831732..3832142 (+) 411 WP_007497462.1 hypothetical protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19578.13 Da        Isoelectric Point: 4.6109

>NTDB_id=986096 MHI58_RS19685 WP_045034920.1 3827605..3828147(-) (ssbA) [Bacillus sp. FSL K6-2869]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGAGSGGYSGGGNSGGQYYGGSQNDQNPFGNEPSQSPYGNQNNQNRNQGNSFN
DDPFANDGKPIDISDDDLPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=986096 MHI58_RS19685 WP_045034920.1 3827605..3828147(-) (ssbA) [Bacillus sp. FSL K6-2869]
ATGCTAAACCGTGTTGTATTGGTCGGAAGACTAACAAAAGACCCTGAGCTTCGCTACACGCCTAATGGTGCGGCTGTAGC
CACGTTTACTCTAGCTGTGAATCGTACGTTTACGAATCAATCTGGAGAGCGTGAAGCCGATTTCATTAACTGTGTTACTT
GGAGAAGACAAGCCGAGAACGTGGCTAATTTCTTGAAAAAAGGAAGTCTTGCCGGTGTAGACGGTCGCTTGCAGACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAAGTTCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAG
CGGCGGTGCTGGTTCAGGTGGATACAGCGGCGGTGGCAATAGCGGAGGCCAGTATTATGGCGGCAGCCAAAATGATCAGA
ATCCATTTGGAAATGAACCAAGTCAAAGTCCATATGGCAATCAAAACAACCAAAATCGTAATCAGGGAAATAGCTTCAAT
GATGACCCATTTGCGAATGATGGTAAACCGATTGACATCTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

85.556

100

0.856
  ssb Latilactobacillus sakei subsp. sakei 23K

58.889

100

0.589
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

58.889

0.378
  ssb Glaesserella parasuis strain SC1401

34.536

100

0.372

Multiple sequence alignment