Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   MHB83_RS16165 Genome accession   NZ_CP152034
Coordinates   3183376..3183669 (-) Length   97 a.a.
NCBI ID   WP_003217322.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-3149     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3178376..3188669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHB83_RS16115 (MHB83_16115) sinR 3178539..3178874 (+) 336 WP_012010555.1 transcriptional regulator SinR Regulator
  MHB83_RS16120 (MHB83_16120) - 3178942..3179742 (-) 801 WP_003217403.1 TasA family protein -
  MHB83_RS16125 (MHB83_16125) - 3179800..3180372 (-) 573 WP_342496474.1 signal peptidase I -
  MHB83_RS16130 (MHB83_16130) tapA 3180424..3180951 (-) 528 WP_137054980.1 amyloid fiber anchoring/assembly protein TapA -
  MHB83_RS16135 (MHB83_16135) - 3181251..3181529 (+) 279 WP_003217457.1 DUF3889 domain-containing protein -
  MHB83_RS16140 (MHB83_16140) - 3181563..3181757 (-) 195 WP_034620826.1 YqzE family protein -
  MHB83_RS16145 (MHB83_16145) comGG 3181817..3182200 (-) 384 WP_137054979.1 competence type IV pilus minor pilin ComGG -
  MHB83_RS16150 (MHB83_16150) comGF 3182197..3182697 (-) 501 WP_137054978.1 competence type IV pilus minor pilin ComGF -
  MHB83_RS16155 (MHB83_16155) comGE 3182636..3182953 (-) 318 WP_003217390.1 competence type IV pilus minor pilin ComGE -
  MHB83_RS16160 (MHB83_16160) comGD 3182937..3183383 (-) 447 WP_003217424.1 competence type IV pilus minor pilin ComGD -
  MHB83_RS16165 (MHB83_16165) comGC 3183376..3183669 (-) 294 WP_003217322.1 competence type IV pilus major pilin ComGC Machinery gene
  MHB83_RS16170 (MHB83_16170) comGB 3183686..3184726 (-) 1041 WP_137054977.1 competence type IV pilus assembly protein ComGB -
  MHB83_RS16175 (MHB83_16175) comGA 3184707..3185777 (-) 1071 WP_342496475.1 competence type IV pilus ATPase ComGA Machinery gene
  MHB83_RS16180 (MHB83_16180) - 3185955..3186827 (-) 873 WP_003217438.1 STAS domain-containing protein -
  MHB83_RS16190 (MHB83_16190) - 3187051..3187431 (-) 381 WP_003217382.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  MHB83_RS16195 (MHB83_16195) - 3187644..3187886 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10739.69 Da        Isoelectric Point: 7.3837

>NTDB_id=986025 MHB83_RS16165 WP_003217322.1 3183376..3183669(-) (comGC) [Bacillus sp. FSL K6-3149]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQTIQAKGCEGLKSMVSTQVMAYELEHDGKTPSLAELEKEGYVKKGLT
CPNGKAIVIQNGHVKHE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=986025 MHB83_RS16165 WP_003217322.1 3183376..3183669(-) (comGC) [Bacillus sp. FSL K6-3149]
ATGAATGATAAAGGATTTACTCTGTTAGAAATGTTAATTGTCATGCTTGTGATTTCGATTCTTTTACTTATTACCATTCC
GAATATTACTCGTCACCACCAAACGATTCAAGCAAAGGGCTGTGAAGGGCTTAAATCAATGGTGAGCACTCAGGTGATGG
CATATGAATTAGAGCACGATGGCAAGACACCATCTTTAGCTGAATTAGAAAAAGAAGGCTATGTTAAAAAGGGATTAACG
TGTCCTAATGGAAAAGCGATTGTCATTCAAAACGGCCATGTGAAGCATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

68.041

100

0.68
  comGC Staphylococcus aureus MW2

41.304

94.845

0.392
  comGC Staphylococcus aureus N315

41.304

94.845

0.392

Multiple sequence alignment