Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACOAKG_RS30815 Genome accession   NZ_CP184261
Coordinates   6838537..6840162 (+) Length   541 a.a.
NCBI ID   WP_359443274.1    Uniprot ID   -
Organism   Streptomyces sp. JL3001     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6833537..6845162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOAKG_RS30785 (ACOAKG_30785) lepB 6834241..6835332 (+) 1092 WP_330356400.1 signal peptidase I -
  ACOAKG_RS30790 (ACOAKG_30790) lepB 6835220..6836185 (+) 966 WP_420077078.1 signal peptidase I -
  ACOAKG_RS30795 (ACOAKG_30795) lepB 6836425..6837198 (+) 774 WP_330356402.1 signal peptidase I -
  ACOAKG_RS30800 (ACOAKG_30800) - 6837188..6837700 (+) 513 WP_359443270.1 NUDIX hydrolase -
  ACOAKG_RS30805 (ACOAKG_30805) - 6837757..6838065 (+) 309 WP_003965949.1 DUF2469 domain-containing protein -
  ACOAKG_RS30810 (ACOAKG_30810) - 6838173..6838535 (+) 363 WP_359443272.1 YraN family protein -
  ACOAKG_RS30815 (ACOAKG_30815) comM 6838537..6840162 (+) 1626 WP_359443274.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACOAKG_RS30820 (ACOAKG_30820) dprA 6840159..6841313 (+) 1155 WP_359443275.1 DNA-processing protein DprA -
  ACOAKG_RS30825 (ACOAKG_30825) whiG 6841626..6842468 (+) 843 WP_107902371.1 RNA polymerase sigma factor WhiG -
  ACOAKG_RS30830 (ACOAKG_30830) - 6842563..6843120 (+) 558 WP_126902808.1 TetR/AcrR family transcriptional regulator -
  ACOAKG_RS30835 (ACOAKG_30835) - 6843179..6843811 (-) 633 WP_406261881.1 murein hydrolase activator EnvC family protein -
  ACOAKG_RS30840 (ACOAKG_30840) rpsB 6844153..6845076 (+) 924 WP_330356406.1 30S ribosomal protein S2 -

Sequence

Protein


Download         Length: 541 a.a.        Molecular weight: 56522.84 Da        Isoelectric Point: 6.4349

>NTDB_id=985765 ACOAKG_RS30815 WP_359443274.1 6838537..6840162(+) (comM) [Streptomyces sp. JL3001]
MGFARTCSVALVGVEGVVVEVQADLEPGVAAFTLVGLPDKSLSESRDRVRAAVVNSGGEWPQKKLTVGLSPASVPKAGSG
FDLAVACAVLGAAERIDPRVLADIVMIGELGLDGRVRPVRGILPAVIAAADAGYEQVVVPECAAAEASLVPGVSVLGVRS
LRQLIAVLTDEPVPEEEPDDQGRPDPLLAGLRVPGTGAATGMHSLGAIQSDHGHDLADVVGQISARTAVEVAAAGGHHLF
LEGPPGAGKTMLAERLPAILPRLGRGESLEVTAVHSVAGLLPPGKPLIDVAPYCAPHHSATMQALVGGGQGIARPGAVSL
SHRGVLFLDETPEFSSQALDALRQPLEAGHVVIARSAGVVRFPAKFLMVLAANPCPCGRFSQTDDMCECPPSAIRRYQAR
LSGPLLDRVDLRVEVDRVTRAQLTERGARGESTATVADRVRAARERASARLAGTPWRTNSEIPGRELRSRWYAAIGAMDE
AERNLERGVLTARGLDRVLRVAWTVADLLGHDRPEATDVALALQLRTGVPRGVPMAIGALT

Nucleotide


Download         Length: 1626 bp        

>NTDB_id=985765 ACOAKG_RS30815 WP_359443274.1 6838537..6840162(+) (comM) [Streptomyces sp. JL3001]
ATGGGTTTCGCGCGTACGTGCTCGGTGGCGCTGGTGGGCGTCGAAGGGGTCGTGGTCGAGGTCCAGGCGGACCTGGAGCC
CGGGGTGGCGGCATTCACCCTGGTGGGCCTGCCGGACAAGAGCTTGTCGGAGAGCCGGGACCGGGTTCGGGCGGCCGTCG
TGAACTCGGGCGGTGAGTGGCCGCAGAAGAAGCTCACTGTCGGGCTCAGCCCGGCGTCGGTGCCGAAGGCGGGCAGCGGC
TTCGACCTGGCGGTGGCCTGCGCCGTCCTCGGAGCAGCCGAGCGGATCGACCCGCGGGTTCTCGCCGACATCGTGATGAT
CGGAGAGCTCGGCCTGGACGGCCGTGTGCGACCGGTCCGGGGCATCCTTCCAGCAGTGATCGCTGCGGCGGACGCAGGCT
ATGAGCAGGTGGTCGTCCCGGAATGCGCCGCGGCCGAGGCCTCGCTGGTGCCGGGCGTGTCCGTGTTGGGCGTACGCAGT
CTGCGCCAGTTGATCGCCGTCCTCACGGACGAGCCCGTGCCCGAAGAGGAACCCGACGACCAGGGCCGCCCGGATCCGCT
GCTCGCGGGCCTGCGCGTGCCGGGGACGGGTGCGGCCACGGGCATGCACAGCCTCGGCGCGATCCAGTCCGACCACGGGC
ACGACCTCGCCGATGTGGTCGGCCAGATCTCGGCGCGTACGGCCGTGGAGGTGGCCGCGGCAGGCGGGCATCACCTGTTC
CTGGAGGGGCCGCCCGGGGCAGGCAAGACGATGCTCGCGGAGCGGCTGCCGGCCATCCTGCCCCGGCTCGGCAGGGGAGA
GTCGCTGGAGGTCACGGCGGTGCACTCGGTGGCGGGTCTGCTGCCTCCTGGCAAGCCCCTGATCGACGTGGCCCCCTATT
GCGCCCCGCACCACTCGGCGACGATGCAGGCGCTCGTGGGCGGTGGCCAAGGCATCGCGCGGCCCGGCGCGGTGTCGCTC
TCCCATCGGGGTGTCCTGTTCCTGGACGAGACGCCTGAGTTCAGCAGTCAGGCCCTCGACGCGCTGCGACAACCCTTGGA
GGCCGGTCATGTCGTGATCGCGCGCAGCGCGGGCGTGGTGCGCTTCCCGGCGAAGTTCCTGATGGTGCTCGCCGCCAACC
CCTGTCCTTGCGGCCGCTTCTCCCAGACGGACGACATGTGCGAGTGTCCGCCGTCGGCGATCCGTCGCTACCAGGCGCGG
CTCTCCGGACCGCTGCTCGACCGCGTCGACCTCAGGGTCGAGGTCGACCGGGTCACTCGCGCGCAGCTGACCGAGCGCGG
AGCCCGGGGCGAGTCCACCGCGACGGTCGCCGACCGAGTGCGTGCGGCCCGCGAACGAGCCTCGGCCCGGCTCGCCGGTA
CCCCTTGGCGAACCAACAGCGAGATCCCCGGACGCGAGCTGCGCAGCCGTTGGTACGCCGCGATCGGCGCCATGGACGAG
GCGGAGCGGAACCTGGAACGAGGCGTGCTGACCGCCCGTGGACTCGACCGCGTCCTGCGCGTCGCCTGGACCGTCGCCGA
CCTGCTCGGTCACGACCGGCCAGAGGCGACGGACGTTGCCCTGGCCCTGCAGCTGCGCACCGGTGTGCCGCGAGGCGTCC
CCATGGCCATCGGGGCGCTCACGTGA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(215-422)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(430-526)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

39.4

98.521

0.388
  comM Vibrio cholerae O1 biovar El Tor strain E7946

39.469

97.412

0.384
  comM Vibrio cholerae strain A1552

39.469

97.412

0.384
  comM Acinetobacter baylyi ADP1

38.534

98.336

0.379
  comM Haemophilus influenzae Rd KW20

37.547

97.967

0.368
  comM Glaesserella parasuis strain SC1401

36.792

97.967

0.36

Multiple sequence alignment