Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MHI39_RS26250 Genome accession   NZ_CP152029
Coordinates   5259753..5260250 (-) Length   165 a.a.
NCBI ID   WP_251339463.1    Uniprot ID   -
Organism   Heyndrickxia sp. FSL K6-6286     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5254753..5265250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI39_RS26230 (MHI39_26230) - 5255038..5257050 (-) 2013 WP_342540480.1 methyl-accepting chemotaxis protein -
  MHI39_RS26235 (MHI39_26235) - 5257383..5257958 (+) 576 WP_342540481.1 sigma-70 family RNA polymerase sigma factor -
  MHI39_RS26240 (MHI39_26240) - 5257948..5258979 (+) 1032 WP_259548544.1 hypothetical protein -
  MHI39_RS26245 (MHI39_26245) rpsR 5259482..5259718 (-) 237 WP_058005131.1 30S ribosomal protein S18 -
  MHI39_RS26250 (MHI39_26250) ssbA 5259753..5260250 (-) 498 WP_251339463.1 single-stranded DNA-binding protein Machinery gene
  MHI39_RS26255 (MHI39_26255) rpsF 5260313..5260600 (-) 288 WP_342540482.1 30S ribosomal protein S6 -
  MHI39_RS26260 (MHI39_26260) ychF 5260875..5261975 (-) 1101 WP_071975499.1 redox-regulated ATPase YchF -
  MHI39_RS26265 (MHI39_26265) - 5262370..5262564 (-) 195 WP_058005135.1 DUF951 domain-containing protein -
  MHI39_RS26270 (MHI39_26270) - 5262568..5263452 (-) 885 WP_342541494.1 mechanosensitive ion channel family protein -
  MHI39_RS26275 (MHI39_26275) yyaC 5263610..5264239 (+) 630 WP_342540483.1 spore protease YyaC -
  MHI39_RS26280 (MHI39_26280) - 5264269..5264985 (-) 717 WP_071975497.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18351.11 Da        Isoelectric Point: 4.7726

>NTDB_id=985761 MHI39_RS26250 WP_251339463.1 5259753..5260250(-) (ssbA) [Heyndrickxia sp. FSL K6-6286]
MMNRVVLVGRLTKDPDLRYTPSGAAVATFTLAVNRTFTNQQGEREADFINCVVWRKPAENVANFLKKGSLAGVDGRLQTR
NYEGQDGKRVYVTEVVAESVQFLEPRNSGQPRTGNNDFYGGGQGNQGNPFSQNQNQRNQGYTRVDEDPFSNDGQPIDISD
DDLPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=985761 MHI39_RS26250 WP_251339463.1 5259753..5260250(-) (ssbA) [Heyndrickxia sp. FSL K6-6286]
ATGATGAACAGAGTAGTATTAGTAGGTCGCTTAACGAAAGATCCTGATTTACGATATACTCCGAGTGGGGCTGCTGTTGC
TACATTTACTCTTGCTGTTAATCGTACATTTACGAATCAACAAGGTGAAAGAGAGGCAGATTTTATTAATTGCGTAGTGT
GGCGCAAACCTGCAGAAAATGTTGCTAACTTCTTGAAAAAGGGAAGTTTAGCGGGTGTTGATGGACGTTTGCAAACTCGT
AATTATGAAGGTCAAGATGGAAAACGTGTCTATGTTACTGAAGTTGTGGCAGAAAGCGTTCAATTCTTAGAGCCAAGAAA
TTCTGGACAACCTCGTACTGGTAATAATGATTTTTATGGCGGTGGCCAAGGAAATCAGGGTAACCCATTTAGTCAAAATC
AGAATCAACGAAATCAAGGATATACACGAGTAGATGAAGATCCATTCTCAAATGATGGGCAACCAATCGATATTTCAGAT
GACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

71.591

100

0.764
  ssb Latilactobacillus sakei subsp. sakei 23K

61.176

100

0.63
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

64.242

0.412
  ssb Glaesserella parasuis strain SC1401

33.889

100

0.37

Multiple sequence alignment