Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   R8611_RS10540 Genome accession   NZ_AP026927
Coordinates   2054998..2055660 (-) Length   220 a.a.
NCBI ID   WP_000649974.1    Uniprot ID   A0A0F7YBW3
Organism   Streptococcus pneumoniae strain PZ900700178     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2049998..2060660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8611_RS10515 (PC0174_20390) - 2050148..2050414 (-) 267 WP_317647963.1 Veg family protein -
  R8611_RS10520 (PC0174_20400) dnaB 2050416..2051768 (-) 1353 WP_000852486.1 replicative DNA helicase -
  R8611_RS10525 (PC0174_20410) rplI 2051812..2052264 (-) 453 WP_000864220.1 50S ribosomal protein L9 -
  R8611_RS10530 (PC0174_20420) - 2052261..2054234 (-) 1974 WP_000715109.1 DHH family phosphoesterase -
  R8611_RS10535 (PC0174_20430) hpf 2054370..2054918 (-) 549 WP_317647965.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  R8611_RS10540 (PC0174_20440) comFC/cflB 2054998..2055660 (-) 663 WP_000649974.1 ComF family protein Machinery gene
  R8611_RS10545 (PC0174_20450) comFA/cflA 2055657..2056955 (-) 1299 WP_000867605.1 DEAD/DEAH box helicase Machinery gene
  R8611_RS10550 (PC0174_20460) - 2057011..2057646 (+) 636 WP_000395739.1 YigZ family protein -
  R8611_RS10555 (PC0174_20470) cysK 2057931..2058851 (+) 921 WP_000029866.1 cysteine synthase A -
  R8611_RS10560 - 2058926..2059464 (-) 539 Protein_2048 transposase -
  R8611_RS10565 (PC0174_20490) - 2059437..2059745 (+) 309 Protein_2049 transposase -
  R8611_RS10570 (PC0174_20500) tnpB 2059881..2060222 (-) 342 WP_050208954.1 IS66 family insertion sequence element accessory protein TnpB -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25169.03 Da        Isoelectric Point: 7.7116

>NTDB_id=98549 R8611_RS10540 WP_000649974.1 2054998..2055660(-) (comFC/cflB) [Streptococcus pneumoniae strain PZ900700178]
MKCLLCGQTMKTVLTFSSLLLLRNDDSCLCSDCDSTFERIGEENCPNCMKTELSTKCQDCQLWCKEGVGVSHRAIFTYNQ
AMKDFFSRYKFDGDFLLRKVFASFLSEELKKYKEYQFVVIPLSPDRYANRGFNQVEGLVEAAGFEYLDLLEKREERASSS
KNRSERLGTELPFFIKSGVTIPKKILLIDDIYTTGATINRVKKLLEEAGAKDVKTFSLVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=98549 R8611_RS10540 WP_000649974.1 2054998..2055660(-) (comFC/cflB) [Streptococcus pneumoniae strain PZ900700178]
ATGAAGTGCTTGTTATGTGGGCAGACTATGAAGACTGTTTTAACTTTTAGTAGTCTCTTACTTCTGAGGAATGATGACTC
TTGTCTTTGTTCAGACTGTGATTCTACTTTTGAAAGAATTGGGGAAGAGAACTGTCCAAATTGTATGAAAACAGAGTTGT
CAACAAAGTGTCAAGATTGTCAACTTTGGTGTAAAGAAGGAGTTGGAGTCAGTCATAGAGCGATTTTTACTTACAATCAA
GCTATGAAGGATTTTTTCAGTCGGTATAAGTTTGATGGAGACTTCCTGTTAAGAAAAGTTTTCGCTTCATTTTTAAGTGA
GGAGTTGAAAAAGTACAAAGAGTATCAATTTGTTGTAATTCCCCTAAGTCCTGATAGATATGCTAATAGAGGATTTAATC
AGGTTGAGGGCTTGGTAGAGGCAGCAGGCTTTGAGTATCTGGATTTATTAGAGAAAAGAGAAGAGAGAGCCAGTTCTTCT
AAAAATCGTTCAGAGCGCTTGGGGACAGAACTTCCTTTCTTTATTAAAAGTGGAGTCACTATTCCTAAAAAAATCCTACT
TATAGATGATATCTATACTACAGGAGCAACTATAAATCGTGTTAAGAAACTGTTGGAAGAAGCTGGTGCTAAGGATGTAA
AAACATTTTCCCTTGTAAGATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(153-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F7YBW3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae Rx1

100

100

1
  comFC/cflB Streptococcus pneumoniae D39

100

100

1
  comFC/cflB Streptococcus pneumoniae R6

100

100

1
  comFC/cflB Streptococcus pneumoniae TIGR4

99.545

100

0.995
  comFC/cflB Streptococcus mitis NCTC 12261

91.364

100

0.914
  comFC/cflB Streptococcus mitis SK321

90.909

100

0.909

Multiple sequence alignment