Detailed information NTG0985358

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: MHI08_RS18675
• Genome accession: NZ_CP152022
• Coordinates: 3650628..3651170 (-)
• Length: 180 a.a.
• NCBI ID: WP_007497456.1
• Uniprot ID: A0A5K1N7D0
• Organism: Bacillus sp. FSL M7-0791
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	3649179..3659913	3650628..3651170	within	0

Gene organization within MGE regions

Location: 3649179..3659913

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MHI08_RS18665 (MHI08_18665)	-	3649179..3650144 (-)	966	WP_056766768.1	ABC transporter ATP-binding protein	-
MHI08_RS18670 (MHI08_18670)	rpsR	3650348..3650587 (-)	240	WP_008359105.1	30S ribosomal protein S18	-
MHI08_RS18675 (MHI08_18675)	ssbA	3650628..3651170 (-)	543	WP_007497456.1	single-stranded DNA-binding protein SsbA	Machinery gene
MHI08_RS18680 (MHI08_18680)	rpsF	3651207..3651494 (-)	288	WP_024424058.1	30S ribosomal protein S6	-
MHI08_RS18685 (MHI08_18685)	ychF	3651603..3652703 (-)	1101	WP_056766770.1	redox-regulated ATPase YchF	-
MHI08_RS18690 (MHI08_18690)	-	3652920..3653126 (-)	207	WP_008347561.1	DUF951 domain-containing protein	-
MHI08_RS18695 (MHI08_18695)	-	3653422..3654741 (+)	1320	WP_342499878.1	hydrolase	-
MHI08_RS18700 (MHI08_18700)	-	3654757..3655167 (+)	411	WP_024424061.1	hypothetical protein	-
MHI08_RS18705 (MHI08_18705)	-	3655193..3656248 (-)	1056	WP_080652961.1	hypothetical protein	-
MHI08_RS18710 (MHI08_18710)	yyaC	3656321..3656947 (+)	627	WP_024424063.1	spore protease YyaC	-
MHI08_RS18715 (MHI08_18715)	-	3656973..3657827 (-)	855	WP_342492184.1	ParB/RepB/Spo0J family partition protein	-
MHI08_RS18720 (MHI08_18720)	soj	3657820..3658581 (-)	762	WP_008360890.1	sporulation initiation inhibitor protein Soj	-
MHI08_RS18725 (MHI08_18725)	-	3658794..3658928 (-)	135	WP_254964772.1	hypothetical protein	-
MHI08_RS18730 (MHI08_18730)	noc	3659038..3659913 (-)	876	WP_024424067.1	nucleoid occlusion protein	-

Sequence

Protein

• Length: 180 a.a.
• Molecular weight: 19605.15 Da
• Isoelectric Point: 4.6109

>NTDB_id=985358 MHI08_RS18675 WP_007497456.1 3650628..3651170(-) (ssbA) [Bacillus sp. FSL M7-0791]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGAGSGGYSGGGNSGGQYYGGSQNDQNPFGNEPSQNPYGNQNNQNRNQGNSFN
DDPFANDGKPIDISDDDLPF

Nucleotide

• Length: 543 bp

>NTDB_id=985358 MHI08_RS18675 WP_007497456.1 3650628..3651170(-) (ssbA) [Bacillus sp. FSL M7-0791]
ATGCTAAACCGTGTTGTATTGGTCGGAAGACTAACAAAAGACCCTGAGCTTCGCTACACGCCTAATGGTGCGGCTGTAGC
CACGTTTACTCTAGCTGTGAATCGTACGTTTACGAATCAATCTGGAGAGCGTGAAGCCGATTTCATTAACTGTGTTACTT
GGAGAAGACAAGCCGAGAACGTGGCTAATTTCTTGAAAAAAGGAAGTCTTGCCGGTGTAGACGGTCGTTTGCAGACAAGA
AACTATGAAAATCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTTCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAGAG
CGGCGGTGCTGGTTCAGGTGGATACAGCGGCGGTGGCAATAGCGGAGGCCAGTATTATGGCGGTAGCCAAAACGATCAGA
ATCCATTTGGAAATGAACCAAGTCAAAATCCATATGGCAATCAAAACAACCAAAATCGTAATCAGGGAAATAGCTTTAAT
GATGACCCATTTGCGAACGATGGTAAACCGATTGACATCTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

3D structure

• AlphaFold DB: A0A5K1N7D0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	85.556	100	0.856
ssb	Latilactobacillus sakei subsp. sakei 23K	55.376	100	0.572
ssbB	Bacillus subtilis subsp. subtilis str. 168	64.151	58.889	0.378
ssb	Glaesserella parasuis strain SC1401	35.714	100	0.361