Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   NYE28_RS18505 Genome accession   NZ_CP152013
Coordinates   3667847..3668536 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus sp. FSL R5-0443     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3662847..3673536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE28_RS18470 (NYE28_18470) - 3663044..3663526 (-) 483 WP_003151394.1 flagellar protein FlgN -
  NYE28_RS18475 (NYE28_18475) flgM 3663541..3663807 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  NYE28_RS18480 (NYE28_18480) - 3663877..3664296 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  NYE28_RS18485 (NYE28_18485) comFC 3664370..3665059 (-) 690 WP_342490487.1 double zinc ribbon domain-containing protein Machinery gene
  NYE28_RS18490 (NYE28_18490) - 3665065..3665349 (-) 285 WP_007407481.1 competence protein ComFB -
  NYE28_RS18495 (NYE28_18495) comFA 3665407..3666792 (-) 1386 WP_099320008.1 DEAD/DEAH box helicase Machinery gene
  NYE28_RS18500 (NYE28_18500) - 3666901..3667749 (-) 849 WP_003151387.1 DegV family protein -
  NYE28_RS18505 (NYE28_18505) degU 3667847..3668536 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NYE28_RS18510 (NYE28_18510) degS 3668613..3669776 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  NYE28_RS18515 (NYE28_18515) - 3669999..3670646 (+) 648 WP_061581228.1 YigZ family protein -
  NYE28_RS18520 (NYE28_18520) - 3670651..3671886 (+) 1236 WP_025285355.1 LCP family protein -
  NYE28_RS18525 (NYE28_18525) - 3671985..3673061 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=984928 NYE28_RS18505 WP_003219701.1 3667847..3668536(-) (degU) [Bacillus sp. FSL R5-0443]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=984928 NYE28_RS18505 WP_003219701.1 3667847..3668536(-) (degU) [Bacillus sp. FSL R5-0443]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment