Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   NYE28_RS18485 Genome accession   NZ_CP152013
Coordinates   3664370..3665059 (-) Length   229 a.a.
NCBI ID   WP_342490487.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0443     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3659370..3670059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE28_RS18450 (NYE28_18450) fliW 3659461..3659892 (-) 432 WP_015240684.1 flagellar assembly protein FliW -
  NYE28_RS18455 (NYE28_18455) - 3659922..3660491 (-) 570 WP_038460037.1 DUF6470 family protein -
  NYE28_RS18460 (NYE28_18460) flgL 3660582..3661499 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  NYE28_RS18465 (NYE28_18465) flgK 3661511..3663028 (-) 1518 WP_032869556.1 flagellar hook-associated protein FlgK -
  NYE28_RS18470 (NYE28_18470) - 3663044..3663526 (-) 483 WP_003151394.1 flagellar protein FlgN -
  NYE28_RS18475 (NYE28_18475) flgM 3663541..3663807 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  NYE28_RS18480 (NYE28_18480) - 3663877..3664296 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  NYE28_RS18485 (NYE28_18485) comFC 3664370..3665059 (-) 690 WP_342490487.1 double zinc ribbon domain-containing protein Machinery gene
  NYE28_RS18490 (NYE28_18490) - 3665065..3665349 (-) 285 WP_007407481.1 competence protein ComFB -
  NYE28_RS18495 (NYE28_18495) comFA 3665407..3666792 (-) 1386 WP_099320008.1 DEAD/DEAH box helicase Machinery gene
  NYE28_RS18500 (NYE28_18500) - 3666901..3667749 (-) 849 WP_003151387.1 DegV family protein -
  NYE28_RS18505 (NYE28_18505) degU 3667847..3668536 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NYE28_RS18510 (NYE28_18510) degS 3668613..3669776 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25317.98 Da        Isoelectric Point: 8.0779

>NTDB_id=984926 NYE28_RS18485 WP_342490487.1 3664370..3665059(-) (comFC) [Bacillus sp. FSL R5-0443]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQFKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTVGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=984926 NYE28_RS18485 WP_342490487.1 3664370..3665059(-) (comFC) [Bacillus sp. FSL R5-0443]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTATATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAACTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATTCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGTGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(171-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.471

99.127

0.59

Multiple sequence alignment