Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   NYE28_RS18495 Genome accession   NZ_CP152013
Coordinates   3665407..3666792 (-) Length   461 a.a.
NCBI ID   WP_099320008.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0443     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3660407..3671792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE28_RS18460 (NYE28_18460) flgL 3660582..3661499 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  NYE28_RS18465 (NYE28_18465) flgK 3661511..3663028 (-) 1518 WP_032869556.1 flagellar hook-associated protein FlgK -
  NYE28_RS18470 (NYE28_18470) - 3663044..3663526 (-) 483 WP_003151394.1 flagellar protein FlgN -
  NYE28_RS18475 (NYE28_18475) flgM 3663541..3663807 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  NYE28_RS18480 (NYE28_18480) - 3663877..3664296 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  NYE28_RS18485 (NYE28_18485) comFC 3664370..3665059 (-) 690 WP_342490487.1 double zinc ribbon domain-containing protein Machinery gene
  NYE28_RS18490 (NYE28_18490) - 3665065..3665349 (-) 285 WP_007407481.1 competence protein ComFB -
  NYE28_RS18495 (NYE28_18495) comFA 3665407..3666792 (-) 1386 WP_099320008.1 DEAD/DEAH box helicase Machinery gene
  NYE28_RS18500 (NYE28_18500) - 3666901..3667749 (-) 849 WP_003151387.1 DegV family protein -
  NYE28_RS18505 (NYE28_18505) degU 3667847..3668536 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NYE28_RS18510 (NYE28_18510) degS 3668613..3669776 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  NYE28_RS18515 (NYE28_18515) - 3669999..3670646 (+) 648 WP_061581228.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52775.27 Da        Isoelectric Point: 10.1560

>NTDB_id=984927 NYE28_RS18495 WP_099320008.1 3665407..3666792(-) (comFA) [Bacillus sp. FSL R5-0443]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRIKRFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYYWNQAYENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNVRAEGVYAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGITNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=984927 NYE28_RS18495 WP_099320008.1 3665407..3666792(-) (comFA) [Bacillus sp. FSL R5-0443]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGACCAGCGCATCAAGCGTTTTATAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTATTGGAATCAGGCCTATGAAAACAG
CTGGGAACCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCTCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGTCTGACTCCGTTAATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACCGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACATGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAATGTAAGGGCAGAAGGCGTTTATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATTACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(329-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.391

99.783

0.623
  comFA Latilactobacillus sakei subsp. sakei 23K

39.713

90.672

0.36

Multiple sequence alignment