Detailed information NTG0098491

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: ACAK30_RS14515
• Genome accession: NZ_AP031579
• Coordinates: 3020255..3021259 (+)
• Length: 334 a.a.
• NCBI ID: WP_001154002.1
• Uniprot ID: A3M7W1
• Organism: Acinetobacter baumannii strain JUNP406
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3015255..3026259

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACAK30_RS14505 (JUNP406_2887)	-	3018215..3019555 (+)	1341	WP_000437078.1	deoxyguanosinetriphosphate triphosphohydrolase	-
ACAK30_RS14510 (JUNP406_2888)	ruvA	3019647..3020246 (+)	600	WP_000578663.1	Holliday junction branch migration protein RuvA	-
ACAK30_RS14515 (JUNP406_2889)	ruvB	3020255..3021259 (+)	1005	WP_001154002.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
ACAK30_RS14520 (JUNP406_2890)	-	3021463..3022797 (+)	1335	WP_004746408.1	M20 family metallopeptidase	-
ACAK30_RS14525 (JUNP406_2891)	ybgC	3023008..3023415 (+)	408	WP_001273591.1	tol-pal system-associated acyl-CoA thioesterase	-
ACAK30_RS14530 (JUNP406_2892)	tolQ	3023439..3024137 (+)	699	WP_004746406.1	protein TolQ	-
ACAK30_RS14535 (JUNP406_2893)	tolR	3024137..3024589 (+)	453	WP_001007561.1	protein TolR	-
ACAK30_RS14540 (JUNP406_2894)	tolA	3024593..3025996 (+)	1404	WP_004746405.1	cell envelope integrity protein TolA	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 36815.05 Da
• Isoelectric Point: 4.7936

>NTDB_id=98491 ACAK30_RS14515 WP_001154002.1 3020255..3021259(+) (ruvB) [Acinetobacter baumannii strain JUNP406]
MQDRLISGTEKPEDHFDRAIRPTSLADYIGQPVVREQMEIFIGAARGRGEALDHTLIFGPPGLGKTTLANIIAREMGGNL
KSTSGPVLERAGDLAAMLTNLEEGDVLFIDEIHRLSPVIEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVAATTR
AGLLTSPLRDRFGIVQRLEFYSVEDLTHIVSRSANLMDVPITVEGAEEVARRSRGTPRIANRLLRRVRDYAQVKGTGEVN
HEMAQRALDMLNVDKAGLDTLDRRYLSMLLERFDGGPAGVEALAAAMAEDSGTLEDVIEPYLIQQGYVMRTARGRIATNQ
SYLQFGMTPPEPKN

Nucleotide

• Length: 1005 bp

>NTDB_id=98491 ACAK30_RS14515 WP_001154002.1 3020255..3021259(+) (ruvB) [Acinetobacter baumannii strain JUNP406]
ATGCAAGACCGTCTAATCAGTGGAACAGAAAAACCTGAAGATCATTTTGATCGGGCTATTCGACCGACTTCACTTGCCGA
TTATATCGGGCAACCAGTCGTACGCGAGCAAATGGAAATTTTCATCGGTGCGGCTCGTGGTCGTGGTGAAGCACTCGATC
ACACACTGATTTTCGGTCCACCGGGCTTAGGAAAAACCACGCTTGCCAATATTATTGCGCGTGAAATGGGTGGCAATCTC
AAATCCACTTCAGGGCCTGTTTTAGAGCGTGCGGGTGATTTGGCTGCAATGCTAACTAACCTTGAAGAAGGCGATGTTTT
ATTTATTGATGAAATTCACCGTCTTTCACCAGTAATTGAAGAAATTCTGTATCCAGCAATGGAAGATTACCAACTCGATA
TCATGATTGGTGAAGGCCCTGCTGCTCGTTCAATTAAACTCGATTTACCACCTTTTACGCTCGTTGCTGCGACCACACGT
GCCGGCTTACTCACCTCACCCCTACGTGACCGTTTCGGTATTGTGCAACGTCTTGAATTCTATTCTGTAGAAGACCTAAC
TCACATCGTGTCACGATCTGCAAACCTCATGGATGTACCCATTACAGTTGAGGGTGCAGAAGAAGTTGCACGCCGTTCAC
GCGGAACACCGCGTATTGCCAATCGTTTATTACGCCGTGTACGTGACTATGCACAAGTAAAAGGTACAGGCGAAGTTAAC
CATGAAATGGCACAACGTGCGCTTGATATGCTTAATGTCGATAAAGCTGGTTTAGATACCTTAGACCGACGTTATTTAAG
TATGCTGTTAGAACGTTTTGATGGTGGACCTGCTGGTGTTGAAGCCCTTGCAGCTGCTATGGCTGAAGATAGCGGAACAC
TTGAAGATGTTATTGAACCTTATTTAATTCAGCAAGGTTATGTTATGCGTACTGCACGAGGTCGCATTGCAACCAACCAA
TCTTATTTACAGTTTGGCATGACGCCACCTGAGCCTAAAAACTAA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-322)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

3D structure

• AlphaFold DB: A3M7W1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	57.704	99.102	0.572
ruvB	Synechocystis sp. PCC 6803	57.325	94.012	0.539
ruvB	Streptococcus pneumoniae TIGR4	56.113	95.509	0.536
ruvB	Streptococcus pneumoniae R6	56.113	95.509	0.536
ruvB	Streptococcus pneumoniae D39	56.113	95.509	0.536
ruvB	Helicobacter pylori 26695	54.934	91.018	0.5